Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   PYW31_RS09220 Genome accession   NZ_CP118976
Coordinates   1900907..1901470 (-) Length   187 a.a.
NCBI ID   WP_046838110.1    Uniprot ID   -
Organism   Staphylococcus succinus strain DSM 14617     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895907..1906470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW31_RS09185 - 1896202..1897554 (-) 1353 WP_046838114.1 isochorismate synthase -
  PYW31_RS09190 - 1897736..1898674 (+) 939 WP_046838113.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PYW31_RS09195 - 1898766..1899332 (-) 567 WP_046838112.1 GNAT family N-acetyltransferase -
  PYW31_RS09200 - 1899499..1899711 (+) 213 WP_046838117.1 TM2 domain-containing protein -
  PYW31_RS09205 - 1900139..1900330 (-) 192 WP_046838111.1 hypothetical protein -
  PYW31_RS09220 comK/comK1 1900907..1901470 (-) 564 WP_046838110.1 competence protein ComK Regulator
  PYW31_RS09225 - 1901724..1901942 (+) 219 WP_046838109.1 IDEAL domain-containing protein -
  PYW31_RS09230 - 1902042..1903031 (-) 990 WP_046838108.1 lipoate--protein ligase -
  PYW31_RS09235 - 1903233..1903418 (+) 186 WP_046838107.1 YkvS family protein -
  PYW31_RS09240 - 1903424..1904026 (+) 603 WP_046838106.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  PYW31_RS09245 - 1904196..1905704 (-) 1509 WP_046838105.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22072.35 Da        Isoelectric Point: 9.2547

>NTDB_id=797087 PYW31_RS09220 WP_046838110.1 1900907..1901470(-) (comK/comK1) [Staphylococcus succinus strain DSM 14617]
MIQQYIIKKGDMALQPCNLSIGQYEGTSIYKYKEESNVIKDRIHKIIDRSCRFYGSSYVFKKEDTMRITGICSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQSIRTLKDKKSKVTFVDNQSMIVNISAHSMQHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKSQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=797087 PYW31_RS09220 WP_046838110.1 1900907..1901470(-) (comK/comK1) [Staphylococcus succinus strain DSM 14617]
ATGATTCAACAATATATTATTAAAAAAGGTGATATGGCGCTTCAACCATGTAACTTGTCAATTGGACAGTATGAAGGTAC
ATCTATCTACAAGTACAAAGAAGAAAGTAATGTCATAAAAGATCGAATACATAAAATTATCGACCGTTCATGCAGGTTCT
ATGGTAGTAGTTATGTATTTAAAAAAGAAGATACCATGAGAATCACTGGTATTTGTAGTAAACCACCCATTTTATTCACC
CCATTATTTCCTACTTATTTCTTTCCAACTCATTCAGATCGTAAAGAAGAAAACACTTGGATTAACATTCATTATGTTCA
GAGTATTAGGACGTTAAAAGATAAGAAATCTAAAGTGACTTTCGTAGATAATCAATCTATGATTGTTAATATTTCAGCAC
ATAGTATGCAACATCAATACTTAAATGGTATATACTATTATTATATGATGGATAGAGCAGCTAGAGTTGCTACATTTGAT
CCTGAATCTCCTATTGATTATACGAAATCACAATTAAATATTTACGAAGCTTTGGCTAAATACTCTTTATTTGAAAATAA
GTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

53.552

97.861

0.524
  comK/comK1 Staphylococcus aureus N315

53.552

97.861

0.524