Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RA106_RS06790 Genome accession   NZ_CP132900
Coordinates   1312702..1313628 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   Q5M3H5
Organism   Streptococcus thermophilus strain CICC 20372     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307702..1318628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA106_RS06760 (RA106_06755) - 1307779..1308573 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  RA106_RS06765 (RA106_06760) - 1308758..1309135 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  RA106_RS06770 (RA106_06765) - 1309140..1309838 (+) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  RA106_RS06775 (RA106_06770) - 1309850..1310635 (+) 786 WP_002951425.1 hypothetical protein -
  RA106_RS06780 (RA106_06775) - 1310685..1311614 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  RA106_RS06785 (RA106_06780) amiE 1311607..1312692 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  RA106_RS06790 (RA106_06785) amiD 1312702..1313628 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  RA106_RS06795 (RA106_06790) amiC 1313628..1315121 (-) 1494 WP_011681416.1 ABC transporter permease Regulator
  RA106_RS06800 (RA106_06795) amiA 1315183..1317150 (-) 1968 WP_024703940.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=797085 RA106_RS06790 WP_002946409.1 1312702..1313628(-) (amiD) [Streptococcus thermophilus strain CICC 20372]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=797085 RA106_RS06790 WP_002946409.1 1312702..1313628(-) (amiD) [Streptococcus thermophilus strain CICC 20372]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964