Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PYW39_RS06115 Genome accession   NZ_CP118973
Coordinates   1228474..1228791 (+) Length   105 a.a.
NCBI ID   WP_002465742.1    Uniprot ID   -
Organism   Staphylococcus warneri strain DSM 20316     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223474..1233791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW39_RS06085 - 1224265..1224468 (+) 204 WP_002451885.1 YqgQ family protein -
  PYW39_RS06090 - 1224465..1225451 (+) 987 WP_103286295.1 ROK family glucokinase -
  PYW39_RS06095 - 1225451..1225774 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  PYW39_RS06100 - 1225778..1226401 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  PYW39_RS06105 comGA 1226448..1227422 (+) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  PYW39_RS06110 comGB 1227394..1228461 (+) 1068 WP_002465743.1 competence type IV pilus assembly protein ComGB -
  PYW39_RS06115 comGC 1228474..1228791 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  PYW39_RS06120 comGD 1228769..1229209 (+) 441 WP_015364970.1 competence type IV pilus minor pilin ComGD Machinery gene
  PYW39_RS06125 - 1229407..1229904 (+) 498 WP_002465737.1 competence type IV pilus minor pilin ComGF -
  PYW39_RS06130 - 1230063..1230581 (+) 519 WP_164553445.1 shikimate kinase -
  PYW39_RS06135 gcvT 1230753..1231844 (+) 1092 WP_002465750.1 glycine cleavage system aminomethyltransferase GcvT -
  PYW39_RS06140 gcvPA 1231863..1233212 (+) 1350 WP_103286297.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11738.79 Da        Isoelectric Point: 9.5430

>NTDB_id=797012 PYW39_RS06115 WP_002465742.1 1228474..1228791(+) (comGC) [Staphylococcus warneri strain DSM 20316]
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=797012 PYW39_RS06115 WP_002465742.1 1228474..1228791(+) (comGC) [Staphylococcus warneri strain DSM 20316]
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGCTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

81.188

96.19

0.781
  comGC Staphylococcus aureus N315

81.188

96.19

0.781
  comYC Streptococcus gordonii str. Challis substr. CH1

43.434

94.286

0.41
  comYC Streptococcus suis isolate S10

50

76.19

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

42.553

89.524

0.381