Detailed information NTG0797011

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: PYW39_RS06105
• Genome accession: NZ_CP118973
• Coordinates: 1226448..1227422 (+)
• Length: 324 a.a.
• NCBI ID: WP_002465784.1
• Uniprot ID: -
• Organism: Staphylococcus warneri strain DSM 20316
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1221448..1232422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYW39_RS06070	rpmG	1221889..1222038 (+)	150	WP_002451882.1	50S ribosomal protein L33	-
PYW39_RS06075	-	1222270..1222824 (+)	555	WP_015364967.1	5-formyltetrahydrofolate cyclo-ligase	-
PYW39_RS06080	-	1222821..1224275 (+)	1455	WP_015364968.1	rhomboid family intramembrane serine protease	-
PYW39_RS06085	-	1224265..1224468 (+)	204	WP_002451885.1	YqgQ family protein	-
PYW39_RS06090	-	1224465..1225451 (+)	987	WP_103286295.1	ROK family glucokinase	-
PYW39_RS06095	-	1225451..1225774 (+)	324	WP_015364969.1	MTH1187 family thiamine-binding protein	-
PYW39_RS06100	-	1225778..1226401 (+)	624	WP_002465751.1	MBL fold metallo-hydrolase	-
PYW39_RS06105	comGA	1226448..1227422 (+)	975	WP_002465784.1	competence type IV pilus ATPase ComGA	Machinery gene
PYW39_RS06110	comGB	1227394..1228461 (+)	1068	WP_002465743.1	competence type IV pilus assembly protein ComGB	-
PYW39_RS06115	comGC	1228474..1228791 (+)	318	WP_002465742.1	competence type IV pilus major pilin ComGC	Machinery gene
PYW39_RS06120	comGD	1228769..1229209 (+)	441	WP_015364970.1	competence type IV pilus minor pilin ComGD	Machinery gene
PYW39_RS06125	-	1229407..1229904 (+)	498	WP_002465737.1	competence type IV pilus minor pilin ComGF	-
PYW39_RS06130	-	1230063..1230581 (+)	519	WP_164553445.1	shikimate kinase	-
PYW39_RS06135	gcvT	1230753..1231844 (+)	1092	WP_002465750.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37163.35 Da
• Isoelectric Point: 9.2695

>NTDB_id=797011 PYW39_RS06105 WP_002465784.1 1226448..1227422(+) (comGA) [Staphylococcus warneri strain DSM 20316]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=797011 PYW39_RS06105 WP_002465784.1 1226448..1227422(+) (comGA) [Staphylococcus warneri strain DSM 20316]
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAATAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCATTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGCCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGACTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	74.383	100	0.744
comGA	Staphylococcus aureus N315	74.383	100	0.744