Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   PYW39_RS06120 Genome accession   NZ_CP118973
Coordinates   1228769..1229209 (+) Length   146 a.a.
NCBI ID   WP_015364970.1    Uniprot ID   -
Organism   Staphylococcus warneri strain DSM 20316     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223769..1234209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW39_RS06085 - 1224265..1224468 (+) 204 WP_002451885.1 YqgQ family protein -
  PYW39_RS06090 - 1224465..1225451 (+) 987 WP_103286295.1 ROK family glucokinase -
  PYW39_RS06095 - 1225451..1225774 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  PYW39_RS06100 - 1225778..1226401 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  PYW39_RS06105 comGA 1226448..1227422 (+) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  PYW39_RS06110 comGB 1227394..1228461 (+) 1068 WP_002465743.1 competence type IV pilus assembly protein ComGB -
  PYW39_RS06115 comGC 1228474..1228791 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  PYW39_RS06120 comGD 1228769..1229209 (+) 441 WP_015364970.1 competence type IV pilus minor pilin ComGD Machinery gene
  PYW39_RS06125 - 1229407..1229904 (+) 498 WP_002465737.1 competence type IV pilus minor pilin ComGF -
  PYW39_RS06130 - 1230063..1230581 (+) 519 WP_164553445.1 shikimate kinase -
  PYW39_RS06135 gcvT 1230753..1231844 (+) 1092 WP_002465750.1 glycine cleavage system aminomethyltransferase GcvT -
  PYW39_RS06140 gcvPA 1231863..1233212 (+) 1350 WP_103286297.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17009.34 Da        Isoelectric Point: 10.5759

>NTDB_id=797013 PYW39_RS06120 WP_015364970.1 1228769..1229209(+) (comGD) [Staphylococcus warneri strain DSM 20316]
MAKRLQIKAYNYIEILMVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEEHGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=797013 PYW39_RS06120 WP_015364970.1 1228769..1229209(+) (comGD) [Staphylococcus warneri strain DSM 20316]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATATTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.993

100

0.5
  comGD Staphylococcus aureus N315

48.993

100

0.5