Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   PYV58_RS01470 Genome accession   NZ_CP118892
Coordinates   317971..318720 (+) Length   249 a.a.
NCBI ID   WP_004816666.1    Uniprot ID   N8YIE2
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 312971..323720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS01455 (PYV58_01455) ponA 313571..316111 (-) 2541 WP_034615058.1 penicillin-binding protein PBP1a -
  PYV58_RS01460 (PYV58_01460) comM 316275..317333 (+) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  PYV58_RS01465 (PYV58_01465) pilN 317333..317974 (+) 642 WP_034615056.1 PilN domain-containing protein Machinery gene
  PYV58_RS01470 (PYV58_01470) comO 317971..318720 (+) 750 WP_004816666.1 type 4a pilus biogenesis protein PilO Machinery gene
  PYV58_RS01475 (PYV58_01475) pilP 318717..319247 (+) 531 WP_034615053.1 pilus assembly protein PilP Machinery gene
  PYV58_RS01480 (PYV58_01480) pilQ 319268..321442 (+) 2175 WP_034615050.1 type IV pilus secretin PilQ family protein Machinery gene
  PYV58_RS01485 (PYV58_01485) aroK 321479..322021 (+) 543 WP_004725433.1 shikimate kinase AroK -
  PYV58_RS01490 (PYV58_01490) aroB 322058..323137 (+) 1080 WP_034615047.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28292.06 Da        Isoelectric Point: 5.1653

>NTDB_id=796090 PYV58_RS01470 WP_004816666.1 317971..318720(+) (comO) [Acinetobacter sp. TAC-1]
MSREDFEQLESSVNDAPKKNKMTVEKFFQQFNTLDMNNYGSWPLSVKVTCWVFLFFLVCAIGYFLAIRPKLDAIDQARTV
EQNLLTEFKEKDSKLRNLQQYQAQLQQMEANFNQQLEQLPKETEIPSLVEDINVTGVSSGLKFKNIKLEPEVKQEFFIEQ
PISIDATGDYHSFGSFVSSLAALPRIVTLHDFTITGTPSQDNKSDVPVIDYTIKAKTYRYIGADEQKINKSANAVAQKTT
TPQQGGKPQ

Nucleotide


Download         Length: 750 bp        

>NTDB_id=796090 PYV58_RS01470 WP_004816666.1 317971..318720(+) (comO) [Acinetobacter sp. TAC-1]
ATGAGTCGTGAAGATTTTGAGCAATTAGAATCATCTGTAAATGATGCTCCAAAAAAGAACAAGATGACTGTTGAGAAGTT
TTTTCAACAGTTCAATACCTTGGATATGAATAACTATGGCAGTTGGCCTTTATCCGTTAAAGTCACCTGTTGGGTATTCT
TGTTTTTTTTGGTGTGTGCAATTGGCTATTTTTTAGCAATTAGACCTAAATTAGATGCAATTGATCAAGCACGTACAGTT
GAACAAAATTTATTAACTGAGTTTAAAGAAAAAGACTCTAAATTAAGAAACTTGCAGCAATATCAAGCACAATTGCAACA
AATGGAAGCAAATTTTAATCAGCAATTAGAGCAACTTCCTAAAGAAACTGAAATTCCGAGTCTAGTTGAAGACATTAACG
TGACAGGGGTAAGTTCTGGTTTGAAATTTAAAAATATCAAATTAGAACCAGAAGTGAAGCAGGAGTTCTTTATTGAGCAG
CCGATCTCGATTGATGCAACAGGGGATTATCATTCATTTGGCAGTTTTGTCAGTAGTTTGGCTGCTTTACCACGTATTGT
CACTTTGCATGATTTCACAATTACAGGAACACCTAGTCAAGACAATAAATCTGATGTGCCAGTGATTGACTATACAATTA
AAGCAAAAACCTATCGTTATATTGGTGCTGATGAGCAGAAGATAAATAAATCTGCGAATGCTGTAGCACAGAAAACAACG
ACACCTCAGCAAGGAGGGAAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8YIE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

71.983

93.173

0.671
  pilO Acinetobacter baumannii D1279779

68.163

98.394

0.671