Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PYV58_RS01480 Genome accession   NZ_CP118892
Coordinates   319268..321442 (+) Length   724 a.a.
NCBI ID   WP_034615050.1    Uniprot ID   A0AAX3PLQ1
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314268..326442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS01460 (PYV58_01460) comM 316275..317333 (+) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  PYV58_RS01465 (PYV58_01465) pilN 317333..317974 (+) 642 WP_034615056.1 PilN domain-containing protein Machinery gene
  PYV58_RS01470 (PYV58_01470) comO 317971..318720 (+) 750 WP_004816666.1 type 4a pilus biogenesis protein PilO Machinery gene
  PYV58_RS01475 (PYV58_01475) pilP 318717..319247 (+) 531 WP_034615053.1 pilus assembly protein PilP Machinery gene
  PYV58_RS01480 (PYV58_01480) pilQ 319268..321442 (+) 2175 WP_034615050.1 type IV pilus secretin PilQ family protein Machinery gene
  PYV58_RS01485 (PYV58_01485) aroK 321479..322021 (+) 543 WP_004725433.1 shikimate kinase AroK -
  PYV58_RS01490 (PYV58_01490) aroB 322058..323137 (+) 1080 WP_034615047.1 3-dehydroquinate synthase -
  PYV58_RS01495 (PYV58_01495) - 323154..324017 (+) 864 WP_004816673.1 hypothetical protein -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 78781.47 Da        Isoelectric Point: 8.8059

>NTDB_id=796092 PYV58_RS01480 WP_034615050.1 319268..321442(+) (pilQ) [Acinetobacter sp. TAC-1]
MKKSLKNIFNGDGKFMNSQLRQFTMAAVSIAIMQVAAAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLI
LDFDQAKQTINQSSIAVASEEASTVDIAADDQRSRLTVNLKNSGSFTTRVEGNTFILKINNANQAAALPTYASSASILNK
QNQGIADIGFQRGNAGEGQVIVNLSGANTPVDVQQQGSKVVIRTLGNKIPAHLIRRLNVNDFATPVSSVDAYNDGSNGVI
TIQSSGSYEYMAFQAENKLTVSLKRPVENKVNRPNVSQSYTGKKISLDFQDIEVRRVLQLLADFTSINMVAADSVQGNIT
LRLKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKAIAQSVKLAPIQTEYIQLNYAKVAEVLKLLQDS
RNPKGAQTNNTNNTDSLALESLLSLRGSAVADTRTNTLIINDTANNIDKIRKMIDLLDISVKQVMVEARIVRATTDFTKE
MGVKWGILSQGITKNNDLLVGGSDQTLWDLKTPDSNGKYTITRPDNLNVDLGVTTAGASKIAFGLISMSDFMLDLELSAL
QADGYGEVISTPKVMTADKQKAKVASGQQIPYQSTQTAGGSAVATTEFKDALLSLDVTPSITPEGKVQMQLNVTSDSAGQ
IVNGNVAINKNEINTNVLVDDGETVVLGGIFEQETKNSQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSR
TRNH

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=796092 PYV58_RS01480 WP_034615050.1 319268..321442(+) (pilQ) [Acinetobacter sp. TAC-1]
ATGAAAAAGAGTTTGAAAAATATCTTTAACGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGGC
AGTGTCAATTGCGATTATGCAGGTTGCAGCAGCGCAAACAACCATGACCAATATTGTACCGATGAAAATACCGGGGCAAG
GTACAGAAATTCGTGTGATGTTTAATGGCTTACCGCCACAGCCTCAAGCCTATCAATTGGATAATCCATCTCGACTGATT
TTAGACTTTGATCAGGCGAAGCAAACAATCAATCAATCATCCATTGCTGTGGCGAGTGAAGAAGCGTCGACTGTAGATAT
TGCGGCCGATGATCAACGTTCACGCTTAACAGTAAATTTAAAAAATAGTGGTTCTTTTACAACGCGTGTTGAAGGGAATA
CCTTTATTTTAAAGATTAACAATGCCAATCAAGCTGCTGCTTTACCGACTTATGCATCATCTGCATCTATACTGAATAAG
CAAAATCAAGGCATCGCAGATATCGGTTTTCAGCGTGGCAATGCGGGTGAGGGACAGGTTATTGTAAATCTGTCTGGTGC
AAATACACCTGTAGATGTGCAACAACAGGGCAGTAAAGTTGTTATTCGAACATTAGGGAATAAAATTCCAGCACATTTAA
TTCGTCGTTTAAATGTCAATGATTTTGCGACCCCAGTTTCTTCTGTGGATGCTTATAATGATGGTTCCAATGGTGTAATC
ACCATTCAATCTTCGGGGAGCTATGAATATATGGCTTTTCAAGCGGAAAATAAATTGACCGTGAGTTTAAAGCGCCCTGT
AGAAAATAAAGTAAATCGTCCCAATGTGAGTCAATCTTATACGGGTAAGAAAATCTCACTGGATTTTCAAGATATTGAAG
TACGCCGTGTGCTACAGCTGCTTGCTGATTTTACCAGTATTAATATGGTGGCTGCGGATTCAGTTCAAGGTAATATCACT
TTACGTTTAAAAGATGTACCTTGGGATCAGGCCTTAGATATTATTTTAAAAACCAAAAATTTAGATAAGCGCCGTAATGG
GAGTGTGATTTGGATTGCGCCTGTCACCGAGCTGATTAAAGCAGAAGAAGATGAAGCCAAAGCAATTGCACAAAGTGTAA
AATTAGCACCAATTCAAACTGAATATATTCAGCTTAATTATGCAAAAGTTGCAGAAGTTCTTAAATTGTTACAGGACTCT
AGAAACCCTAAAGGTGCGCAGACAAATAATACCAATAATACAGATTCTTTAGCTTTAGAAAGTCTACTGAGCTTAAGAGG
AAGTGCGGTTGCAGATACAAGAACAAATACATTAATTATTAATGATACTGCAAATAATATTGATAAAATCCGTAAAATGA
TTGATCTATTGGATATTTCGGTAAAACAAGTCATGGTTGAAGCACGTATTGTTCGTGCTACGACAGATTTTACCAAAGAA
ATGGGGGTAAAGTGGGGCATTTTATCTCAAGGGATTACCAAGAATAATGATTTGCTGGTTGGTGGAAGTGATCAAACACT
TTGGGATTTAAAAACCCCAGATAGTAATGGCAAATATACCATTACTCGCCCTGATAATTTAAATGTCGATCTTGGTGTGA
CGACTGCGGGTGCAAGTAAGATTGCATTTGGTTTAATTAGTATGTCTGATTTTATGTTAGACCTAGAATTATCTGCATTA
CAAGCTGATGGTTATGGGGAAGTGATTTCAACACCAAAAGTAATGACTGCCGATAAACAAAAAGCCAAAGTTGCTTCGGG
TCAACAAATTCCATATCAGTCAACGCAAACGGCAGGAGGCAGTGCCGTTGCAACAACTGAATTTAAAGATGCTTTGCTCA
GTTTGGATGTTACACCAAGCATTACTCCAGAAGGGAAAGTACAAATGCAGCTAAATGTCACAAGTGACTCAGCTGGCCAA
ATAGTGAATGGAAATGTGGCGATTAACAAGAATGAAATCAATACCAATGTCTTAGTCGATGATGGAGAAACCGTGGTATT
AGGTGGCATTTTTGAACAAGAAACTAAAAACAGTCAGACCAAAGTTCCATTTTTAGGTGATATTCCTTATTTAGGACGAT
TATTTAGAAAAGATGTAAAGTCTGATAATAAACGAGAGTTACTAATCTTTGTGACACCAAGAATTGTTAATGACAGTCGT
ACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(312-354)

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-463)

Bacterial type II and III secretion system protein (Secretin)

(559-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.802

100

0.732
  pilQ Acinetobacter baumannii strain A118

72.802

100

0.732
  comQ Acinetobacter baylyi ADP1

69.972

98.895

0.692
  pilQ Pseudomonas aeruginosa PAK

40.219

100

0.406