Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PYV58_RS01475 Genome accession   NZ_CP118892
Coordinates   318717..319247 (+) Length   176 a.a.
NCBI ID   WP_034615053.1    Uniprot ID   A0A8X8KDZ9
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313717..324247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS01460 (PYV58_01460) comM 316275..317333 (+) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  PYV58_RS01465 (PYV58_01465) pilN 317333..317974 (+) 642 WP_034615056.1 PilN domain-containing protein Machinery gene
  PYV58_RS01470 (PYV58_01470) comO 317971..318720 (+) 750 WP_004816666.1 type 4a pilus biogenesis protein PilO Machinery gene
  PYV58_RS01475 (PYV58_01475) pilP 318717..319247 (+) 531 WP_034615053.1 pilus assembly protein PilP Machinery gene
  PYV58_RS01480 (PYV58_01480) pilQ 319268..321442 (+) 2175 WP_034615050.1 type IV pilus secretin PilQ family protein Machinery gene
  PYV58_RS01485 (PYV58_01485) aroK 321479..322021 (+) 543 WP_004725433.1 shikimate kinase AroK -
  PYV58_RS01490 (PYV58_01490) aroB 322058..323137 (+) 1080 WP_034615047.1 3-dehydroquinate synthase -
  PYV58_RS01495 (PYV58_01495) - 323154..324017 (+) 864 WP_004816673.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19479.58 Da        Isoelectric Point: 6.3532

>NTDB_id=796091 PYV58_RS01475 WP_034615053.1 318717..319247(+) (pilP) [Acinetobacter sp. TAC-1]
MKQLSKIVCGISFAMLLVGCDSRIDAVNQEMANIRNQQPLPIEPAPVFNPVPSFNYSAQQLRSPFLPNSLANELKIMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGAVGQTVGLIQTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPID

Nucleotide


Download         Length: 531 bp        

>NTDB_id=796091 PYV58_RS01475 WP_034615053.1 318717..319247(+) (pilP) [Acinetobacter sp. TAC-1]
ATGAAACAGCTCAGTAAAATAGTTTGTGGAATCTCATTTGCAATGCTGTTGGTGGGGTGCGATTCTCGTATTGATGCCGT
TAACCAAGAAATGGCAAATATTAGAAATCAGCAACCATTGCCGATTGAACCTGCACCAGTATTTAATCCTGTACCAAGCT
TTAATTATTCAGCTCAACAATTACGCAGCCCATTTTTGCCAAATTCATTGGCAAATGAATTGAAAATCATGTCAGGCAAG
CGTGTCTACCCGAATTTTTCAAGACAACCACAGCCGCTTGAAAGCTATCCTTTAGAGTCGTTAACACTGAAAGGAAGTAT
GAAAGGAGCTGTTGGGCAAACAGTGGGGTTGATTCAAACACCTGATGGTGAGATTGAGCGAGTACAACTTGGCAACTACA
TGGGTATGAATCAAGGGCGAATTATTGAAATTACGCCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATAGAAAGACCACGGAGTCTAGTCCTAATCGGTCCAATAGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

72.674

97.727

0.71
  comL Acinetobacter baylyi ADP1

78.481

89.773

0.705