Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PYV58_RS01465 Genome accession   NZ_CP118892
Coordinates   317333..317974 (+) Length   213 a.a.
NCBI ID   WP_034615056.1    Uniprot ID   A0AAX3PM82
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 312333..322974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS01450 (PYV58_01450) - 312707..313510 (+) 804 WP_004816656.1 putative RNA methyltransferase -
  PYV58_RS01455 (PYV58_01455) ponA 313571..316111 (-) 2541 WP_034615058.1 penicillin-binding protein PBP1a -
  PYV58_RS01460 (PYV58_01460) comM 316275..317333 (+) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  PYV58_RS01465 (PYV58_01465) pilN 317333..317974 (+) 642 WP_034615056.1 PilN domain-containing protein Machinery gene
  PYV58_RS01470 (PYV58_01470) comO 317971..318720 (+) 750 WP_004816666.1 type 4a pilus biogenesis protein PilO Machinery gene
  PYV58_RS01475 (PYV58_01475) pilP 318717..319247 (+) 531 WP_034615053.1 pilus assembly protein PilP Machinery gene
  PYV58_RS01480 (PYV58_01480) pilQ 319268..321442 (+) 2175 WP_034615050.1 type IV pilus secretin PilQ family protein Machinery gene
  PYV58_RS01485 (PYV58_01485) aroK 321479..322021 (+) 543 WP_004725433.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23780.31 Da        Isoelectric Point: 6.9917

>NTDB_id=796089 PYV58_RS01465 WP_034615056.1 317333..317974(+) (pilN) [Acinetobacter sp. TAC-1]
MAKINLLPWRDELREQKKKQFVAICVGVALIGLVTVLLAWFYFDHKLQDQEQANQLVTSTNQNLDTQLKTLDGLQERRNA
IIERMKLIQGLQGQRPVIVRLVDELVRIVPAQMYITKFSRVGDKFTIEGKAESPNTVAELLRGLEASEWYRNAFMNSFLA
ADENKNKVQTSVIPRVEESYGSFVVTVDIGEIAATTDGDTTKAGQVPAAGGAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=796089 PYV58_RS01465 WP_034615056.1 317333..317974(+) (pilN) [Acinetobacter sp. TAC-1]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAGAAGAAGAAGCAATTCGTTGCGATATGTGTTGG
GGTTGCACTGATTGGTTTAGTGACAGTGTTATTGGCGTGGTTCTATTTCGACCATAAGTTGCAAGATCAGGAGCAAGCCA
ATCAATTGGTGACCAGTACCAATCAAAATTTAGATACCCAATTAAAAACTTTAGATGGTTTACAAGAACGTCGTAATGCC
ATTATTGAACGTATGAAACTGATCCAAGGCTTACAAGGTCAGCGTCCTGTGATTGTTCGCCTCGTTGATGAGTTGGTTCG
AATTGTCCCTGCACAAATGTACATCACAAAATTTAGTCGTGTGGGTGATAAATTTACCATTGAGGGCAAAGCTGAAAGTC
CAAATACAGTTGCTGAATTGTTGCGTGGATTAGAGGCGTCTGAATGGTATCGAAATGCATTTATGAATTCATTCTTAGCT
GCAGATGAAAATAAAAATAAAGTGCAGACTTCGGTGATCCCTCGTGTAGAAGAATCATATGGAAGTTTTGTTGTGACTGT
AGATATCGGTGAAATAGCAGCGACTACAGATGGGGATACAACGAAAGCTGGACAAGTTCCAGCTGCTGGGGGTGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

72.3

100

0.723
  comN Acinetobacter baylyi ADP1

67.606

100

0.676