Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | HIY_RS03425 | Genome accession | NZ_AP022867 |
| Coordinates | 657655..658068 (+) | Length | 137 a.a. |
| NCBI ID | WP_005656464.1 | Uniprot ID | A0A0H3PEW7 |
| Organism | Haemophilus influenzae strain 2018-Y40 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 652655..663068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HIY_RS03405 (HIY_06530) | - | 653146..655740 (-) | 2595 | WP_005656471.1 | penicillin-binding protein 1A | - |
| HIY_RS03410 (HIY_06540) | comA | 655836..656633 (+) | 798 | WP_005656469.1 | pilus assembly protein PilM | Machinery gene |
| HIY_RS03415 (HIY_06550) | comB | 656634..657140 (+) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| HIY_RS03420 (HIY_06560) | comC | 657137..657658 (+) | 522 | WP_005656465.1 | competence protein ComC | Machinery gene |
| HIY_RS03425 (HIY_06570) | comD | 657655..658068 (+) | 414 | WP_005656464.1 | pilus assembly protein PilP | Machinery gene |
| HIY_RS03430 (HIY_06580) | comE | 658078..659415 (+) | 1338 | WP_005659796.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| HIY_RS03435 (HIY_06590) | - | 659428..660114 (+) | 687 | WP_005656460.1 | ComF family protein | - |
| HIY_RS03440 (HIY_06600) | nfuA | 660190..660786 (+) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| HIY_RS03445 (HIY_06610) | nudC | 660853..661647 (+) | 795 | WP_005656457.1 | NAD(+) diphosphatase | - |
| HIY_RS03450 (HIY_06620) | - | 661683..662273 (+) | 591 | WP_005656455.1 | YjaG family protein | - |
| HIY_RS03455 (HIY_06630) | - | 662413..662685 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15733.94 Da Isoelectric Point: 4.4355
>NTDB_id=79561 HIY_RS03425 WP_005656464.1 657655..658068(+) (comD) [Haemophilus influenzae strain 2018-Y40]
MKYWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQIVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQIVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=79561 HIY_RS03425 WP_005656464.1 657655..658068(+) (comD) [Haemophilus influenzae strain 2018-Y40]
ATGAAGTATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAATAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAATAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
97.81 |
100 |
0.978 |
| comD | Haemophilus influenzae 86-028NP |
97.08 |
100 |
0.971 |