Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | HIY_RS03415 | Genome accession | NZ_AP022867 |
| Coordinates | 656634..657140 (+) | Length | 168 a.a. |
| NCBI ID | WP_005656467.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 2018-Y40 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 651634..662140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HIY_RS03395 (HIY_06510) | - | 651746..652075 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HIY_RS03400 (HIY_06520) | - | 652228..653073 (-) | 846 | WP_005656472.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| HIY_RS03405 (HIY_06530) | - | 653146..655740 (-) | 2595 | WP_005656471.1 | penicillin-binding protein 1A | - |
| HIY_RS03410 (HIY_06540) | comA | 655836..656633 (+) | 798 | WP_005656469.1 | pilus assembly protein PilM | Machinery gene |
| HIY_RS03415 (HIY_06550) | comB | 656634..657140 (+) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| HIY_RS03420 (HIY_06560) | comC | 657137..657658 (+) | 522 | WP_005656465.1 | competence protein ComC | Machinery gene |
| HIY_RS03425 (HIY_06570) | comD | 657655..658068 (+) | 414 | WP_005656464.1 | pilus assembly protein PilP | Machinery gene |
| HIY_RS03430 (HIY_06580) | comE | 658078..659415 (+) | 1338 | WP_005659796.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| HIY_RS03435 (HIY_06590) | - | 659428..660114 (+) | 687 | WP_005656460.1 | ComF family protein | - |
| HIY_RS03440 (HIY_06600) | nfuA | 660190..660786 (+) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| HIY_RS03445 (HIY_06610) | nudC | 660853..661647 (+) | 795 | WP_005656457.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19752.67 Da Isoelectric Point: 9.4939
>NTDB_id=79559 HIY_RS03415 WP_005656467.1 656634..657140(+) (comB) [Haemophilus influenzae strain 2018-Y40]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=79559 HIY_RS03415 WP_005656467.1 656634..657140(+) (comB) [Haemophilus influenzae strain 2018-Y40]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
98.81 |
100 |
0.988 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |