Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PYH58_RS04130 | Genome accession | NZ_CP118813 |
| Coordinates | 873022..873159 (+) | Length | 45 a.a. |
| NCBI ID | WP_353463513.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain 7061 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 868022..878159
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH58_RS04105 (PYH58_04100) | murA | 868331..869626 (+) | 1296 | WP_353463511.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| PYH58_RS04110 (PYH58_04105) | - | 869628..869912 (+) | 285 | WP_053076874.1 | DNA-directed RNA polymerase subunit beta | - |
| PYH58_RS04115 (PYH58_04110) | fabZ | 869912..870349 (+) | 438 | WP_025904489.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| PYH58_RS04120 (PYH58_04115) | - | 870755..871921 (-) | 1167 | WP_107611145.1 | IS256 family transposase | - |
| PYH58_RS04125 (PYH58_04120) | - | 872404..872841 (-) | 438 | WP_353463512.1 | YwpF-like family protein | - |
| PYH58_RS04130 (PYH58_04125) | ssb | 873022..873159 (+) | 138 | WP_353463513.1 | hypothetical protein | Machinery gene |
| PYH58_RS04135 (PYH58_04130) | - | 873140..873592 (+) | 453 | WP_353463514.1 | single-stranded DNA-binding protein | - |
| PYH58_RS04140 (PYH58_04135) | - | 873962..874804 (+) | 843 | WP_353463515.1 | LysM peptidoglycan-binding domain-containing protein | - |
| PYH58_RS04145 (PYH58_04140) | thiD | 875126..875938 (+) | 813 | WP_353463516.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| PYH58_RS04150 (PYH58_04145) | thiM | 875931..876722 (+) | 792 | WP_353463517.1 | hydroxyethylthiazole kinase | - |
| PYH58_RS04155 (PYH58_04150) | thiE | 876723..877364 (+) | 642 | WP_353463518.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 45 a.a. Molecular weight: 5091.99 Da Isoelectric Point: 8.7086
>NTDB_id=795488 PYH58_RS04130 WP_353463513.1 873022..873159(+) (ssb) [Mammaliicoccus sciuri strain 7061]
MLNKSVLVGRLTKDPAYYKKGEIIISTFCLAVERGYKTKDGYDCC
MLNKSVLVGRLTKDPAYYKKGEIIISTFCLAVERGYKTKDGYDCC
Nucleotide
Download Length: 138 bp
>NTDB_id=795488 PYH58_RS04130 WP_353463513.1 873022..873159(+) (ssb) [Mammaliicoccus sciuri strain 7061]
ATGTTAAATAAATCTGTATTAGTTGGACGTTTAACTAAGGACCCTGCATATTATAAGAAAGGCGAAATTATCATTTCTAC
ATTTTGTTTAGCTGTTGAACGCGGATATAAGACTAAAGATGGCTACGATTGCTGTTGA
ATGTTAAATAAATCTGTATTAGTTGGACGTTTAACTAAGGACCCTGCATATTATAAGAAAGGCGAAATTATCATTTCTAC
ATTTTGTTTAGCTGTTGAACGCGGATATAAGACTAAAGATGGCTACGATTGCTGTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
51.111 |
100 |
0.511 |
| ssb | Staphylococcus aureus MW2 |
48.889 |
100 |
0.489 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
93.333 |
0.467 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
42.857 |
93.333 |
0.4 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.857 |
93.333 |
0.4 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
40.476 |
93.333 |
0.378 |