Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PYH63_RS07380 Genome accession   NZ_CP118788
Coordinates   1488175..1488498 (+) Length   107 a.a.
NCBI ID   WP_096541451.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7070     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483175..1493498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS07345 (PYH63_07300) - 1483871..1484074 (+) 204 WP_096596999.1 YqgQ family protein -
  PYH63_RS07350 (PYH63_07305) - 1484071..1485057 (+) 987 WP_096649680.1 ROK family glucokinase -
  PYH63_RS07355 (PYH63_07310) - 1485058..1485369 (+) 312 WP_019165228.1 MTH1187 family thiamine-binding protein -
  PYH63_RS07360 (PYH63_07315) - 1485382..1486011 (+) 630 WP_262609636.1 MBL fold metallo-hydrolase -
  PYH63_RS07365 (PYH63_07320) comGA 1486168..1487142 (+) 975 WP_019165230.1 competence type IV pilus ATPase ComGA Machinery gene
  PYH63_RS07370 (PYH63_07325) - 1487111..1487446 (+) 336 WP_353421102.1 hypothetical protein -
  PYH63_RS07375 (PYH63_07330) - 1487521..1488162 (+) 642 WP_262630578.1 type II secretion system F family protein -
  PYH63_RS07380 (PYH63_07335) comGC 1488175..1488498 (+) 324 WP_096541451.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH63_RS07385 (PYH63_07340) comGD 1488476..1488916 (+) 441 WP_353419057.1 competence type IV pilus minor pilin ComGD -
  PYH63_RS07390 (PYH63_07345) - 1488988..1489221 (+) 234 WP_262612236.1 hypothetical protein -
  PYH63_RS07395 (PYH63_07350) - 1489127..1489612 (+) 486 WP_142302713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PYH63_RS07400 (PYH63_07355) - 1489776..1490303 (+) 528 WP_096596987.1 shikimate kinase -
  PYH63_RS07405 (PYH63_07360) gcvT 1490461..1491552 (+) 1092 WP_262609641.1 glycine cleavage system aminomethyltransferase GcvT -
  PYH63_RS07410 (PYH63_07365) gcvPA 1491565..1492914 (+) 1350 WP_262609642.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11987.11 Da        Isoelectric Point: 8.5012

>NTDB_id=795258 PYH63_RS07380 WP_096541451.1 1488175..1488498(+) (comGC) [Staphylococcus delphini strain 7070]
MIQQLKSKFNQKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEDITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=795258 PYH63_RS07380 WP_096541451.1 1488175..1488498(+) (comGC) [Staphylococcus delphini strain 7070]
ATGATTCAACAACTTAAATCAAAATTTAACCAAAAGAAAGGATTTACTTTAATTGAAATGTTACTTGTGCTGTTAATTAT
TAGTGTGCTATTGATACTCATTATCCCGAATATTGCTAAACAGTCAGATCATATCCAAAAAACGGGCTGTGCAGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGATATCACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

74.737

88.785

0.664
  comGC Staphylococcus aureus MW2

74.737

88.785

0.664
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

85.981

0.383
  comYC Streptococcus suis isolate S10

53.947

71.028

0.383
  comGC/cglC Streptococcus mitis SK321

43.478

85.981

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

47.561

76.636

0.364
  comGC/cglC Streptococcus pneumoniae TIGR4

42.391

85.981

0.364