Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   PYH63_RS07365 Genome accession   NZ_CP118788
Coordinates   1486168..1487142 (+) Length   324 a.a.
NCBI ID   WP_019165230.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7070     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481168..1492142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS07330 (PYH63_07285) rpmG 1481558..1481722 (+) 165 WP_256726578.1 50S ribosomal protein L33 -
  PYH63_RS07335 (PYH63_07290) - 1481872..1482411 (+) 540 WP_096597003.1 5-formyltetrahydrofolate cyclo-ligase -
  PYH63_RS07340 (PYH63_07295) - 1482430..1483869 (+) 1440 WP_262609635.1 rhomboid family intramembrane serine protease -
  PYH63_RS07345 (PYH63_07300) - 1483871..1484074 (+) 204 WP_096596999.1 YqgQ family protein -
  PYH63_RS07350 (PYH63_07305) - 1484071..1485057 (+) 987 WP_096649680.1 ROK family glucokinase -
  PYH63_RS07355 (PYH63_07310) - 1485058..1485369 (+) 312 WP_019165228.1 MTH1187 family thiamine-binding protein -
  PYH63_RS07360 (PYH63_07315) - 1485382..1486011 (+) 630 WP_262609636.1 MBL fold metallo-hydrolase -
  PYH63_RS07365 (PYH63_07320) comGA 1486168..1487142 (+) 975 WP_019165230.1 competence type IV pilus ATPase ComGA Machinery gene
  PYH63_RS07370 (PYH63_07325) - 1487111..1487446 (+) 336 WP_353421102.1 hypothetical protein -
  PYH63_RS07375 (PYH63_07330) - 1487521..1488162 (+) 642 WP_262630578.1 type II secretion system F family protein -
  PYH63_RS07380 (PYH63_07335) comGC 1488175..1488498 (+) 324 WP_096541451.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH63_RS07385 (PYH63_07340) comGD 1488476..1488916 (+) 441 WP_353419057.1 competence type IV pilus minor pilin ComGD -
  PYH63_RS07390 (PYH63_07345) - 1488988..1489221 (+) 234 WP_262612236.1 hypothetical protein -
  PYH63_RS07395 (PYH63_07350) - 1489127..1489612 (+) 486 WP_142302713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PYH63_RS07400 (PYH63_07355) - 1489776..1490303 (+) 528 WP_096596987.1 shikimate kinase -
  PYH63_RS07405 (PYH63_07360) gcvT 1490461..1491552 (+) 1092 WP_262609641.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36882.56 Da        Isoelectric Point: 7.0185

>NTDB_id=795257 PYH63_RS07365 WP_019165230.1 1486168..1487142(+) (comGA) [Staphylococcus delphini strain 7070]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSDKLQLLNKEGVIDEKILR
KYTI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=795257 PYH63_RS07365 WP_019165230.1 1486168..1487142(+) (comGA) [Staphylococcus delphini strain 7070]
ATGCAACTACTATTAGATCATGTCATACAATTTGCACTTCAAAATGAGGCATCGGACATTCATTTCATCCCTTCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCACAAAGTGGGCGCTATATTTATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACGTTGCCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCCCACAGCGTTTTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAAAGCACGTTAATGTATCAAATGGTCGTCTACGCTAAACAAAAGTTAAACTTGAATATC
ATCACGATAGAAGACCCCGTGGAGCAGCTTGTCAACGGTATTACACAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGGTCATCGTTAAAAGCAATCCTTCGTTGTGATCCAGATGTTATCTTAATTGGTGAAATTCGTGACAGCCATATTGCAA
GGGACGTGATACAAGCGAGTTTAAGCGGACATTTAGTCTTGTCGACGATACACGCCAACGATTGTCAAGGGGTGCTCCTG
AGACTGATTGAAATGGGACTCTCTCACCAAGATCTATCTCAATCCATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAATGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAAGAAATTCACTACTTTTTGAATAATAACTTTCAAC
TACCTACTGCTTTCACAAGCCTTTCTGATAAGCTTCAACTTTTGAATAAAGAGGGGGTTATAGATGAAAAAATTTTACGA
AAGTATACGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

58.824

99.691

0.586
  comGA Staphylococcus aureus N315

58.824

99.691

0.586