Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PYH72_RS06515 Genome accession   NZ_CP118782
Coordinates   1376871..1377194 (+) Length   107 a.a.
NCBI ID   WP_096541451.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7072     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371871..1382194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH72_RS06485 (PYH72_06480) - 1372551..1372754 (+) 204 WP_014613816.1 YqgQ family protein -
  PYH72_RS06490 (PYH72_06485) - 1372751..1373737 (+) 987 WP_019165227.1 ROK family glucokinase -
  PYH72_RS06495 (PYH72_06490) - 1373738..1374049 (+) 312 WP_096541463.1 MTH1187 family thiamine-binding protein -
  PYH72_RS06500 (PYH72_06495) - 1374062..1374691 (+) 630 WP_353418052.1 MBL fold metallo-hydrolase -
  PYH72_RS06505 (PYH72_06500) comGA 1374848..1375822 (+) 975 WP_019165230.1 competence type IV pilus ATPase ComGA Machinery gene
  PYH72_RS06510 (PYH72_06505) comGB 1375791..1376858 (+) 1068 WP_096554642.1 competence type IV pilus assembly protein ComGB -
  PYH72_RS06515 (PYH72_06510) comGC 1376871..1377194 (+) 324 WP_096541451.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH72_RS06520 (PYH72_06515) comGD 1377151..1377612 (+) 462 WP_353418053.1 competence type IV pilus minor pilin ComGD -
  PYH72_RS06525 (PYH72_06520) - 1377684..1377917 (+) 234 WP_096555000.1 hypothetical protein -
  PYH72_RS06530 (PYH72_06525) - 1377823..1378095 (+) 273 WP_353422531.1 type II secretion system protein -
  PYH72_RS06535 (PYH72_06530) - 1378073..1378309 (+) 237 WP_353422532.1 hypothetical protein -
  PYH72_RS06540 (PYH72_06535) - 1378473..1379000 (+) 528 WP_096554647.1 shikimate kinase -
  PYH72_RS06545 (PYH72_06540) gcvT 1379158..1380249 (+) 1092 WP_096554649.1 glycine cleavage system aminomethyltransferase GcvT -
  PYH72_RS06550 (PYH72_06545) gcvPA 1380262..1381611 (+) 1350 WP_096586242.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11987.11 Da        Isoelectric Point: 8.5012

>NTDB_id=795197 PYH72_RS06515 WP_096541451.1 1376871..1377194(+) (comGC) [Staphylococcus delphini strain 7072]
MIQQLKSKFNQKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEDITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=795197 PYH72_RS06515 WP_096541451.1 1376871..1377194(+) (comGC) [Staphylococcus delphini strain 7072]
ATGATTCAACAACTGAAATCAAAATTTAACCAAAAGAAAGGATTTACTTTAATTGAAATGTTACTTGTGCTGTTAATTAT
TAGTGTGCTATTGATACTCATTATCCCGAATATTGCTAAACAGTCAGATCATATCCAAAAGACCGGCTGTGCTGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATAGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGATATTACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

74.737

88.785

0.664
  comGC Staphylococcus aureus MW2

74.737

88.785

0.664
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

85.981

0.383
  comYC Streptococcus suis isolate S10

53.947

71.028

0.383
  comGC/cglC Streptococcus mitis SK321

43.478

85.981

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

47.561

76.636

0.364
  comGC/cglC Streptococcus pneumoniae TIGR4

42.391

85.981

0.364