Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | PYH72_RS06505 | Genome accession | NZ_CP118782 |
| Coordinates | 1374848..1375822 (+) | Length | 324 a.a. |
| NCBI ID | WP_019165230.1 | Uniprot ID | - |
| Organism | Staphylococcus delphini strain 7072 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1369848..1380822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH72_RS06470 (PYH72_06465) | rpmG | 1370238..1370402 (+) | 165 | WP_256726578.1 | 50S ribosomal protein L33 | - |
| PYH72_RS06475 (PYH72_06470) | - | 1370552..1371091 (+) | 540 | WP_096554634.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| PYH72_RS06480 (PYH72_06475) | - | 1371110..1372549 (+) | 1440 | WP_096554636.1 | rhomboid family intramembrane serine protease | - |
| PYH72_RS06485 (PYH72_06480) | - | 1372551..1372754 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| PYH72_RS06490 (PYH72_06485) | - | 1372751..1373737 (+) | 987 | WP_019165227.1 | ROK family glucokinase | - |
| PYH72_RS06495 (PYH72_06490) | - | 1373738..1374049 (+) | 312 | WP_096541463.1 | MTH1187 family thiamine-binding protein | - |
| PYH72_RS06500 (PYH72_06495) | - | 1374062..1374691 (+) | 630 | WP_353418052.1 | MBL fold metallo-hydrolase | - |
| PYH72_RS06505 (PYH72_06500) | comGA | 1374848..1375822 (+) | 975 | WP_019165230.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PYH72_RS06510 (PYH72_06505) | comGB | 1375791..1376858 (+) | 1068 | WP_096554642.1 | competence type IV pilus assembly protein ComGB | - |
| PYH72_RS06515 (PYH72_06510) | comGC | 1376871..1377194 (+) | 324 | WP_096541451.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PYH72_RS06520 (PYH72_06515) | comGD | 1377151..1377612 (+) | 462 | WP_353418053.1 | competence type IV pilus minor pilin ComGD | - |
| PYH72_RS06525 (PYH72_06520) | - | 1377684..1377917 (+) | 234 | WP_096555000.1 | hypothetical protein | - |
| PYH72_RS06530 (PYH72_06525) | - | 1377823..1378095 (+) | 273 | WP_353422531.1 | type II secretion system protein | - |
| PYH72_RS06535 (PYH72_06530) | - | 1378073..1378309 (+) | 237 | WP_353422532.1 | hypothetical protein | - |
| PYH72_RS06540 (PYH72_06535) | - | 1378473..1379000 (+) | 528 | WP_096554647.1 | shikimate kinase | - |
| PYH72_RS06545 (PYH72_06540) | gcvT | 1379158..1380249 (+) | 1092 | WP_096554649.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36882.56 Da Isoelectric Point: 7.0185
>NTDB_id=795196 PYH72_RS06505 WP_019165230.1 1374848..1375822(+) (comGA) [Staphylococcus delphini strain 7072]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSDKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSDKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=795196 PYH72_RS06505 WP_019165230.1 1374848..1375822(+) (comGA) [Staphylococcus delphini strain 7072]
ATGCAACTACTATTAGATCATGTCATACAATTTGCACTTCAAAATGAGGCATCGGACATTCATTTCATCCCTTCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATATCAAGCCGGATTGGATATTTCGACACGCCACAAAGCACAAAGTGGACGCTACATATATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACGTTGCCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCCCACAGCGTTTTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAAAGCACGTTAATGTATCAAATGGTCGTCTACGCTAAACAAAAGTTAAACTTGAATATC
ATCACAATAGAAGACCCCGTGGAGCAGCTTGTCAACGGCATTACACAAATTTCTGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATCCTTCGTTGTGATCCAGATGTTATCTTAATTGGTGAAATTCGTGACAGTCATATTGCAA
GGGACGTGATACAAGCGAGTTTAAGCGGGCATTTAGTCTTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTACTG
AGGCTGATTGAAATGGGGCTCTCTCACCAAGATCTATCTCAATCCATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAATGACCAGCGACAACTCGTGTATGAAACGATGGATCAACAAGAGATTCACTACTTTTTGAATAATAACTTTCAAC
TACCTACTGCTTTCACAAGCCTTTCTGATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
ATGCAACTACTATTAGATCATGTCATACAATTTGCACTTCAAAATGAGGCATCGGACATTCATTTCATCCCTTCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATATCAAGCCGGATTGGATATTTCGACACGCCACAAAGCACAAAGTGGACGCTACATATATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACGTTGCCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCCCACAGCGTTTTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAAAGCACGTTAATGTATCAAATGGTCGTCTACGCTAAACAAAAGTTAAACTTGAATATC
ATCACAATAGAAGACCCCGTGGAGCAGCTTGTCAACGGCATTACACAAATTTCTGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATCCTTCGTTGTGATCCAGATGTTATCTTAATTGGTGAAATTCGTGACAGTCATATTGCAA
GGGACGTGATACAAGCGAGTTTAAGCGGGCATTTAGTCTTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTACTG
AGGCTGATTGAAATGGGGCTCTCTCACCAAGATCTATCTCAATCCATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAATGACCAGCGACAACTCGTGTATGAAACGATGGATCAACAAGAGATTCACTACTTTTTGAATAATAACTTTCAAC
TACCTACTGCTTTCACAAGCCTTTCTGATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.824 |
99.691 |
0.586 |
| comGA | Staphylococcus aureus N315 |
58.824 |
99.691 |
0.586 |