Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   PXH68_RS09850 Genome accession   NZ_CP118733
Coordinates   2130785..2131984 (+) Length   399 a.a.
NCBI ID   WP_248028570.1    Uniprot ID   -
Organism   Streptococcus suivaginalis strain 29896     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2125785..2136984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS09820 (PXH68_09805) - 2126409..2129003 (+) 2595 WP_316715722.1 YfhO family protein -
  PXH68_RS09840 (PXH68_09825) - 2129450..2130124 (-) 675 WP_248028563.1 YoaK family protein -
  PXH68_RS09845 (PXH68_09830) rlmH 2130157..2130636 (-) 480 WP_172043794.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PXH68_RS09850 (PXH68_09835) htrA 2130785..2131984 (+) 1200 WP_248028570.1 S1C family serine protease Regulator
  PXH68_RS09855 (PXH68_09840) spo0J 2132046..2132804 (+) 759 WP_205030876.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 399 a.a.        Molecular weight: 41638.33 Da        Isoelectric Point: 4.2845

>NTDB_id=794655 PXH68_RS09850 WP_248028570.1 2130785..2131984(+) (htrA) [Streptococcus suivaginalis strain 29896]
MWRSTYMKKYLKYIILFLFGFGGGLAGALTLGLFQGNSSNQQAGTTQVSTVSYDNETSVTQAVENVQDAVVSVINYRQAS
ASTFSSIFGTNTASSDELQVAGEGSGVIYKKDGDTAYIVTNTHVIDGAEKIEILLASGEKIQGELVGSDTYSDLAVIKIS
SEKVTTVATFADSDTIQVGEVAIAIGSPLGSVYANSVTQGIVSSLSRTVTSQTDDGQTISTNAIQTDTAINPGNSGGPLV
NIQGQVIGINSSKITSSSTSGLGVSVEGMGFAIPSNDVVTIINQLESAGKVTRPALGVHMVNLTDLSTSQLASAGLDNLS
ITSGVVIVSTQAGLPADGVLKQYDVITEINGQAIENKSDLQSALYKHSIGDSIEVTFYRNNQKQTVSIKLTHSTEDLTE

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=794655 PXH68_RS09850 WP_248028570.1 2130785..2131984(+) (htrA) [Streptococcus suivaginalis strain 29896]
ATATGGAGGAGTACTTATATGAAAAAATACCTCAAATATATCATTTTATTCCTATTTGGTTTTGGTGGTGGCTTGGCTGG
TGCCTTAACGCTTGGTCTTTTCCAGGGGAATTCATCTAATCAACAGGCTGGAACGACCCAGGTCAGCACGGTCAGCTATG
ATAATGAAACCTCTGTCACTCAGGCTGTGGAAAACGTACAAGATGCTGTTGTATCGGTTATCAACTACCGACAGGCAAGT
GCCTCAACATTTTCTTCTATTTTTGGAACTAATACAGCAAGTTCAGATGAATTACAAGTTGCTGGTGAAGGTTCTGGTGT
CATCTATAAAAAAGATGGAGATACTGCCTATATCGTAACCAATACTCACGTAATTGATGGGGCTGAAAAAATTGAAATCT
TGCTGGCCTCTGGCGAAAAAATCCAAGGGGAGTTGGTCGGATCGGATACCTATTCTGACCTAGCCGTTATCAAAATTTCT
TCTGAAAAAGTGACAACAGTAGCAACCTTTGCAGATTCTGATACCATTCAAGTTGGAGAAGTAGCAATTGCTATCGGTAG
CCCGCTCGGCAGTGTCTATGCCAACTCTGTGACACAGGGAATTGTCTCTAGTCTAAGTCGTACGGTCACTTCGCAAACTG
ATGATGGTCAAACCATTTCAACAAATGCAATCCAAACCGATACAGCCATAAACCCTGGTAACTCTGGGGGTCCTTTAGTC
AATATTCAAGGACAGGTTATTGGAATCAACTCAAGCAAAATTACATCTAGTTCAACTTCTGGACTTGGGGTCTCTGTCGA
AGGGATGGGATTTGCGATTCCATCAAATGATGTGGTCACTATTATCAATCAACTGGAAAGTGCTGGCAAGGTCACACGTC
CGGCTCTCGGTGTTCATATGGTCAACTTGACAGATCTCTCAACTAGTCAGCTAGCAAGTGCTGGTCTCGACAATCTCTCC
ATTACATCAGGAGTTGTTATCGTTTCTACACAAGCAGGACTTCCTGCTGATGGGGTATTGAAGCAATATGATGTCATTAC
AGAGATTAATGGCCAAGCAATTGAAAATAAGAGTGATTTACAAAGCGCCCTTTATAAACACAGCATTGGCGATAGCATAG
AAGTGACTTTCTATCGTAACAATCAAAAACAAACTGTTTCCATCAAGTTGACACACTCAACAGAAGACTTGACAGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.5

100

0.617

  htrA Streptococcus gordonii str. Challis substr. CH1

58.647

100

0.586

  htrA Streptococcus pneumoniae Rx1

56.091

98.747

0.554

  htrA Streptococcus pneumoniae TIGR4

56.091

98.747

0.554

  htrA Streptococcus pneumoniae D39

56.091

98.747

0.554

  htrA Streptococcus pneumoniae R6

56.091

98.747

0.554

  htrA Streptococcus mitis NCTC 12261

55.838

98.747

0.551