Detailed information
Bioinformatically predicted
Overview
| Name | Cj0011c | Type | Machinery gene |
| Locus tag | EPR_RS01195 | Genome accession | NZ_AP022847 |
| Coordinates | 199834..200079 (+) | Length | 81 a.a. |
| NCBI ID | WP_200763248.1 | Uniprot ID | - |
| Organism | Nitrosophilus alvini strain EPR55-1 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 194834..205079
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPR_RS01165 | - | 195548..196021 (+) | 474 | WP_200763238.1 | helix-turn-helix domain-containing protein | - |
| EPR_RS01170 | - | 196177..196446 (+) | 270 | WP_200763240.1 | RNA recognition motif domain-containing protein | - |
| EPR_RS01175 | - | 196486..197751 (-) | 1266 | WP_200763242.1 | DNA polymerase Y family protein | - |
| EPR_RS01180 | - | 197838..198500 (+) | 663 | WP_200763244.1 | S24 family peptidase | - |
| EPR_RS01185 | - | 198577..199359 (+) | 783 | WP_234697185.1 | GGDEF domain-containing protein | - |
| EPR_RS01190 | - | 199380..199823 (+) | 444 | WP_234697142.1 | Mut7-C RNAse domain-containing protein | - |
| EPR_RS01195 | Cj0011c | 199834..200079 (+) | 246 | WP_200763248.1 | ComEA family DNA-binding protein | Machinery gene |
| EPR_RS01200 | galE | 200076..201104 (+) | 1029 | WP_200763251.1 | UDP-glucose 4-epimerase GalE | - |
| EPR_RS01205 | brnA | 201178..201402 (-) | 225 | WP_200763253.1 | type II toxin-antitoxin system BrnA family antitoxin | - |
| EPR_RS01210 | - | 201389..201652 (-) | 264 | WP_200763255.1 | BrnT family toxin | - |
| EPR_RS01215 | - | 201738..203939 (-) | 2202 | WP_234697186.1 | STT3 domain-containing protein | - |
| EPR_RS01220 | - | 204017..204886 (+) | 870 | WP_200763257.1 | Wzz/FepE/Etk N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 81 a.a. Molecular weight: 9083.07 Da Isoelectric Point: 10.7091
>NTDB_id=79427 EPR_RS01195 WP_200763248.1 199834..200079(+) (Cj0011c) [Nitrosophilus alvini strain EPR55-1]
MFKKIVSVLFFGIILAFAGVDINSASKKELIKLKGIGPAKAKAIMKYRRKQKFVKIEDIMNVKGIGPKIFEKIKDDIEVG
E
MFKKIVSVLFFGIILAFAGVDINSASKKELIKLKGIGPAKAKAIMKYRRKQKFVKIEDIMNVKGIGPKIFEKIKDDIEVG
E
Nucleotide
Download Length: 246 bp
>NTDB_id=79427 EPR_RS01195 WP_200763248.1 199834..200079(+) (Cj0011c) [Nitrosophilus alvini strain EPR55-1]
ATGTTCAAAAAAATAGTGTCTGTTCTCTTTTTTGGTATAATTCTGGCTTTTGCGGGAGTTGATATAAACAGTGCTTCTAA
AAAAGAGCTGATAAAGCTTAAAGGTATAGGTCCTGCCAAAGCGAAAGCTATAATGAAATATAGAAGAAAGCAGAAGTTTG
TAAAGATAGAAGATATTATGAATGTCAAAGGAATAGGGCCTAAAATATTCGAAAAGATAAAAGATGATATAGAGGTGGGC
GAGTGA
ATGTTCAAAAAAATAGTGTCTGTTCTCTTTTTTGGTATAATTCTGGCTTTTGCGGGAGTTGATATAAACAGTGCTTCTAA
AAAAGAGCTGATAAAGCTTAAAGGTATAGGTCCTGCCAAAGCGAAAGCTATAATGAAATATAGAAGAAAGCAGAAGTTTG
TAAAGATAGAAGATATTATGAATGTCAAAGGAATAGGGCCTAAAATATTCGAAAAGATAAAAGATGATATAGAGGTGGGC
GAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50.649 |
95.062 |
0.481 |
| comE | Neisseria gonorrhoeae MS11 |
45.455 |
95.062 |
0.432 |
| comE | Neisseria gonorrhoeae MS11 |
45.455 |
95.062 |
0.432 |
| comE | Neisseria gonorrhoeae MS11 |
45.455 |
95.062 |
0.432 |
| comE | Neisseria gonorrhoeae MS11 |
45.455 |
95.062 |
0.432 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
52.459 |
75.309 |
0.395 |
| comEA | Latilactobacillus sakei subsp. sakei 23K |
49.206 |
77.778 |
0.383 |
| comEA | Acinetobacter baylyi ADP1 |
49.18 |
75.309 |
0.37 |
| comEA | Acinetobacter baumannii D1279779 |
50.847 |
72.84 |
0.37 |