Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PWW23_RS16950 Genome accession   NZ_CP118586
Coordinates   3592293..3592937 (+) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain fish6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3587293..3597937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW23_RS16935 - 3587738..3589186 (-) 1449 WP_110416082.1 MSHA biogenesis protein MshI -
  PWW23_RS16940 csrD 3589198..3591207 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWW23_RS16945 ssb 3591459..3591998 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW23_RS16950 qstR 3592293..3592937 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW23_RS16955 galU 3593099..3593971 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW23_RS16960 uvrA 3594109..3596931 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=793725 PWW23_RS16950 WP_009698824.1 3592293..3592937(+) (qstR) [Vibrio harveyi strain fish6]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=793725 PWW23_RS16950 WP_009698824.1 3592293..3592937(+) (qstR) [Vibrio harveyi strain fish6]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACCTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523