Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PWW22_RS13575 Genome accession   NZ_CP118578
Coordinates   2980480..2981055 (-) Length   191 a.a.
NCBI ID   WP_005451499.1    Uniprot ID   A0A9X3MLM3
Organism   Vibrio harveyi strain fish2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2975480..2986055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW22_RS13550 aroB 2975763..2976863 (-) 1101 WP_038898114.1 3-dehydroquinate synthase -
  PWW22_RS13555 aroK 2976895..2977413 (-) 519 WP_005451507.1 shikimate kinase AroK -
  PWW22_RS13560 pilQ 2977603..2979354 (-) 1752 WP_274881159.1 type IV pilus secretin PilQ family protein Machinery gene
  PWW22_RS13565 pilP 2979389..2979904 (-) 516 WP_274880475.1 pilus assembly protein PilP Machinery gene
  PWW22_RS13570 pilO 2979894..2980487 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  PWW22_RS13575 pilN 2980480..2981055 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  PWW22_RS13580 pilM 2981039..2982055 (-) 1017 WP_026138410.1 type IV pilus assembly protein PilM Machinery gene
  PWW22_RS13585 - 2982234..2984804 (+) 2571 WP_050935720.1 PBP1A family penicillin-binding protein -
  PWW22_RS13590 oxyR 2984871..2985779 (-) 909 WP_005451495.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22244.63 Da        Isoelectric Point: 9.1586

>NTDB_id=793533 PWW22_RS13575 WP_005451499.1 2980480..2981055(-) (pilN) [Vibrio harveyi strain fish2]
MLYHINLLAWRENQREEHRRRFLSLIVLGVIVALGVQWGIGKFYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASVKGGNQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=793533 PWW22_RS13575 WP_005451499.1 2980480..2981055(-) (pilN) [Vibrio harveyi strain fish2]
ATGCTGTATCACATTAACCTCCTTGCATGGCGTGAGAATCAACGTGAAGAACACCGCCGCCGCTTTCTCAGTTTGATCGT
CTTGGGGGTGATTGTTGCGTTGGGCGTGCAATGGGGCATTGGTAAGTTCTATCAATATCAGCAGGATCAACAACAGCAGC
GCCTTGATTATTTGGCGCACTATATCTCCCAGCTTGATAAACGAATCGAAGCGATGAAGATTGCTGAACAAGAGCACAGC
AAGATCTTGGAGAGGTTAAAGATCGTTGAAGGTTTGCAAAATGGGCGTAATAAAACCACGGAGTTCATGAACCTGATGCC
GTCGGTGATCCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGATTATGAAATTGAAATCTCGGGTATCTCTGATA
GTACACCTCGCTTGGCCACCATGCTCGACAACATGGAGCGTTCAGCCAAGCTGCTAGATGTCGACATGCATTCTATCGTT
CATGGTAAAGCGCGTTTTGGGAAAGAGTTTCAGACTTTCAAAGTTTCCTTCATGTTCAAAGACGCCTCGGTGAAAGGAGG
TAACCAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

94.241

100

0.942
  pilN Vibrio cholerae strain A1552

60.452

92.67

0.56