Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PSE45_RS27975 Genome accession   NZ_CP118544
Coordinates   6032468..6032947 (-) Length   159 a.a.
NCBI ID   WP_063231668.1    Uniprot ID   A0A4Y3PQM9
Organism   Brevibacillus parabrevis strain BCP-09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6027468..6037947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE45_RS27955 (PSE45_27955) rplI 6028791..6029234 (-) 444 WP_122962248.1 50S ribosomal protein L9 -
  PSE45_RS27960 (PSE45_27960) - 6029261..6031198 (-) 1938 WP_063231664.1 DHH family phosphoesterase -
  PSE45_RS27965 (PSE45_27965) - 6031203..6032111 (-) 909 WP_122962246.1 DUF2232 domain-containing protein -
  PSE45_RS27970 (PSE45_27970) rpsR 6032196..6032426 (-) 231 WP_005831740.1 30S ribosomal protein S18 -
  PSE45_RS27975 (PSE45_27975) ssbA 6032468..6032947 (-) 480 WP_063231668.1 single-stranded DNA-binding protein Machinery gene
  PSE45_RS27980 (PSE45_27980) rpsF 6032977..6033264 (-) 288 WP_047070274.1 30S ribosomal protein S6 -
  PSE45_RS27985 (PSE45_27985) ychF 6033405..6034505 (-) 1101 WP_122962245.1 redox-regulated ATPase YchF -
  PSE45_RS27990 (PSE45_27990) - 6034737..6035360 (+) 624 WP_217021979.1 NAD(P)-dependent oxidoreductase -
  PSE45_RS27995 (PSE45_27995) - 6035521..6035889 (+) 369 WP_229049782.1 hypothetical protein -
  PSE45_RS28000 (PSE45_28000) pepF 6035995..6037905 (-) 1911 WP_274874631.1 oligoendopeptidase F -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17178.06 Da        Isoelectric Point: 5.2753

>NTDB_id=793183 PSE45_RS27975 WP_063231668.1 6032468..6032947(-) (ssbA) [Brevibacillus parabrevis strain BCP-09]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAINRPRTNQAGEREADFINIVAWQKLADLCASYLRKGRQAAIEGRLQTRS
YDNKEGKRVYVTEVVAENVQFLGGRGNEGGGDNAGYDPGPGFGGGNKPSGQRNNDFDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=793183 PSE45_RS27975 WP_063231668.1 6032468..6032947(-) (ssbA) [Brevibacillus parabrevis strain BCP-09]
ATGAATAAAGTTATTCTCATCGGCAACCTGACGAAAGATCCTGAACTTCGCTACACGCCAAATGGCGTTGCCGTTGCTAC
TTTTACCGTGGCTATCAATCGTCCTCGCACTAACCAGGCGGGTGAGAGAGAAGCCGATTTCATTAATATTGTCGCTTGGC
AAAAACTTGCCGATCTTTGTGCAAGCTACTTGCGCAAAGGAAGACAAGCTGCCATCGAAGGGCGCCTTCAGACGCGTTCC
TACGATAATAAAGAAGGAAAACGCGTATACGTAACGGAAGTCGTTGCTGAAAACGTTCAATTTTTGGGCGGACGAGGCAA
TGAAGGCGGCGGAGATAACGCAGGATACGATCCAGGACCGGGCTTTGGTGGCGGTAACAAGCCATCCGGTCAGAGAAACA
ATGACTTTGATCCGTTTGGTGATCCCTTCGCGAGTGCAGGCAAGCCGATCAACATCTCTGATGATGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3PQM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.597
  ssb Latilactobacillus sakei subsp. sakei 23K

43.678

100

0.478
  ssb Vibrio cholerae strain A1552

37.297

100

0.434
  ssb Neisseria gonorrhoeae MS11

36.571

100

0.403
  ssb Neisseria meningitidis MC58

36

100

0.396
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.39