Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7615_RS04830 Genome accession   NZ_CP131718
Coordinates   896032..896538 (-) Length   168 a.a.
NCBI ID   WP_042593471.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016S11-301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 891032..901538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7615_RS04795 (Q7615_04795) raiA 891265..891588 (-) 324 WP_005653397.1 ribosome-associated translation inhibitor RaiA -
  Q7615_RS04800 (Q7615_04800) bamC 891778..892407 (-) 630 WP_038439193.1 outer membrane protein assembly factor BamC -
  Q7615_RS04805 (Q7615_04805) dapA 892518..893414 (-) 897 WP_050846026.1 4-hydroxy-tetrahydrodipicolinate synthase -
  Q7615_RS04810 (Q7615_04810) bcp 893515..893982 (+) 468 WP_005668209.1 thioredoxin-dependent thiol peroxidase -
  Q7615_RS04815 (Q7615_04815) exbB 894151..894603 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  Q7615_RS04820 (Q7615_04820) exbD 894607..895050 (+) 444 WP_005648853.1 TonB system transport protein ExbD -
  Q7615_RS04825 (Q7615_04825) - 895060..895854 (+) 795 WP_005686676.1 energy transducer TonB -
  Q7615_RS04830 (Q7615_04830) ssb 896032..896538 (-) 507 WP_042593471.1 single-stranded DNA-binding protein Machinery gene
  Q7615_RS04835 (Q7615_04835) uvrA 896692..899523 (+) 2832 WP_058222191.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18753.50 Da        Isoelectric Point: 5.2649

>NTDB_id=792248 Q7615_RS04830 WP_042593471.1 896032..896538(-) (ssb) [Haemophilus influenzae strain 2016S11-301]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=792248 Q7615_RS04830 WP_042593471.1 896032..896538(-) (ssb) [Haemophilus influenzae strain 2016S11-301]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

55.495

100

0.601
  ssb Neisseria meningitidis MC58

50.289

100

0.518
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssb Latilactobacillus sakei subsp. sakei 23K

34.27

100

0.363
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.057

100

0.363