Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7616_RS04355 Genome accession   NZ_CP131717
Coordinates   838407..838913 (-) Length   168 a.a.
NCBI ID   WP_042593471.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 833407..843913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS04320 (Q7616_04325) raiA 833641..833964 (-) 324 WP_005653397.1 ribosome-associated translation inhibitor RaiA -
  Q7616_RS04325 (Q7616_04330) bamC 834154..834783 (-) 630 WP_038439193.1 outer membrane protein assembly factor BamC -
  Q7616_RS04330 (Q7616_04335) dapA 834894..835790 (-) 897 WP_005648859.1 4-hydroxy-tetrahydrodipicolinate synthase -
  Q7616_RS04335 (Q7616_04340) bcp 835891..836358 (+) 468 WP_046067566.1 thioredoxin-dependent thiol peroxidase -
  Q7616_RS04340 (Q7616_04345) exbB 836526..836978 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  Q7616_RS04345 (Q7616_04350) exbD 836982..837425 (+) 444 WP_005648853.1 TonB system transport protein ExbD -
  Q7616_RS04350 (Q7616_04355) - 837435..838229 (+) 795 WP_005692201.1 energy transducer TonB -
  Q7616_RS04355 (Q7616_04360) ssb 838407..838913 (-) 507 WP_042593471.1 single-stranded DNA-binding protein Machinery gene
  Q7616_RS04360 (Q7616_04365) uvrA 839066..841897 (+) 2832 WP_342120491.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18753.50 Da        Isoelectric Point: 5.2649

>NTDB_id=792184 Q7616_RS04355 WP_042593471.1 838407..838913(-) (ssb) [Haemophilus influenzae strain 2016N21-284]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=792184 Q7616_RS04355 WP_042593471.1 838407..838913(-) (ssb) [Haemophilus influenzae strain 2016N21-284]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

55.495

100

0.601
  ssb Neisseria meningitidis MC58

50.289

100

0.518
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssb Latilactobacillus sakei subsp. sakei 23K

34.27

100

0.363
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.057

100

0.363