Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PTQ21_RS05060 Genome accession   NZ_CP118270
Coordinates   1121411..1121899 (-) Length   162 a.a.
NCBI ID   WP_063567379.1    Uniprot ID   -
Organism   Paenibacillus marchantiae strain BMpBG1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1116411..1126899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTQ21_RS05035 (PTQ21_05035) opp4B 1116632..1117594 (-) 963 WP_063567376.1 oligopeptide ABC transporter permease -
  PTQ21_RS05040 (PTQ21_05040) - 1117602..1118534 (-) 933 WP_063567377.1 ABC transporter ATP-binding protein -
  PTQ21_RS05045 (PTQ21_05045) - 1118539..1119537 (-) 999 WP_274570448.1 ABC transporter ATP-binding protein -
  PTQ21_RS05050 (PTQ21_05050) - 1120269..1120862 (-) 594 WP_274569041.1 M15 family metallopeptidase -
  PTQ21_RS05055 (PTQ21_05055) rpsR 1121082..1121354 (-) 273 WP_017691433.1 30S ribosomal protein S18 -
  PTQ21_RS05060 (PTQ21_05060) ssbA 1121411..1121899 (-) 489 WP_063567379.1 single-stranded DNA-binding protein Machinery gene
  PTQ21_RS05065 (PTQ21_05065) rpsF 1121948..1122241 (-) 294 WP_024629534.1 30S ribosomal protein S6 -
  PTQ21_RS05070 (PTQ21_05070) - 1122443..1122637 (+) 195 WP_063567380.1 YjzC family protein -
  PTQ21_RS05080 (PTQ21_05080) - 1123259..1123468 (-) 210 WP_063567381.1 DUF951 domain-containing protein -
  PTQ21_RS05085 (PTQ21_05085) - 1123458..1124399 (-) 942 WP_274569042.1 mechanosensitive ion channel family protein -
  PTQ21_RS05090 (PTQ21_05090) - 1124414..1124677 (-) 264 WP_029880815.1 DUF3343 domain-containing protein -
  PTQ21_RS05095 (PTQ21_05095) yyaC 1124794..1125399 (+) 606 WP_024629529.1 spore protease YyaC -
  PTQ21_RS05100 (PTQ21_05100) - 1125374..1125874 (-) 501 WP_063567383.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17890.71 Da        Isoelectric Point: 4.8369

>NTDB_id=791211 PTQ21_RS05060 WP_063567379.1 1121411..1121899(-) (ssbA) [Paenibacillus marchantiae strain BMpBG1]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEKEADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNNGGGGGGQPMREEPSYGGGGRANNNNNSRSNNQDPFSDDGKPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=791211 PTQ21_RS05060 WP_063567379.1 1121411..1121899(-) (ssbA) [Paenibacillus marchantiae strain BMpBG1]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAGTTGCGTTATACTCCAGCTGGAGTAGCAGTTAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGTGGAGAAAAGGAAGCGGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCTGAGACTTGTGCAAACTATTTGCGCAAAGGACGCCTAGCTGCAGTCGAAGGACGCATTCAAGTACGG
AATTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAACGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAATAACGGTGGCGGCGGTGGTGGTCAACCGATGCGTGAAGAGCCTTCTTACGGAGGCGGCGGGCGCGCGAACA
ATAACAATAATTCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTG
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

48.571

100

0.525
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.963

67.284

0.377
  ssb Neisseria meningitidis MC58

32.597

100

0.364
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.457

78.395

0.364
  ssbA Streptococcus mutans UA159

46.457

78.395

0.364