Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PU634_RS09805 Genome accession   NZ_CP118224
Coordinates   2069013..2069300 (+) Length   95 a.a.
NCBI ID   WP_306760615.1    Uniprot ID   A0AA50Q6I6
Organism   Oceanimonas pelagia strain NTOU-MSR1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064013..2074300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU634_RS09790 (PU634_09800) - 2064487..2065461 (-) 975 WP_306760612.1 calcium/sodium antiporter -
  PU634_RS09795 (PU634_09805) - 2065811..2067301 (-) 1491 WP_306760613.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -
  PU634_RS09800 (PU634_09810) - 2067381..2068733 (-) 1353 WP_306760614.1 aspartate aminotransferase family protein -
  PU634_RS09805 (PU634_09815) comEA 2069013..2069300 (+) 288 WP_306760615.1 helix-hairpin-helix domain-containing protein Machinery gene
  PU634_RS09810 (PU634_09820) galU 2069395..2070300 (+) 906 WP_306760616.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PU634_RS09815 (PU634_09825) - 2070294..2071274 (-) 981 WP_306760617.1 response regulator -
  PU634_RS09820 (PU634_09830) - 2071402..2072085 (+) 684 WP_306760618.1 DnaT-like ssDNA-binding domain-containing protein -
  PU634_RS09825 (PU634_09835) - 2072069..2072917 (+) 849 WP_306760619.1 DnaA ATPase domain-containing protein -
  PU634_RS09830 (PU634_09840) - 2072914..2073153 (-) 240 WP_306760620.1 hypothetical protein -
  PU634_RS09835 (PU634_09845) - 2073163..2073624 (-) 462 WP_306760621.1 phage holin family protein -
  PU634_RS09840 (PU634_09850) - 2073560..2073874 (-) 315 WP_306760622.1 YqjD family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9835.27 Da        Isoelectric Point: 7.0096

>NTDB_id=791112 PU634_RS09805 WP_306760615.1 2069013..2069300(+) (comEA) [Oceanimonas pelagia strain NTOU-MSR1]
MKKRLAPALLAMLLATGAPALANEADAKDVVVTSVNINTATPDQLAQLSGVGPAKAQAIVEYRDANGPFASVDDLARVKG
IGEATVEKNRHLLSN

Nucleotide


Download         Length: 288 bp        

>NTDB_id=791112 PU634_RS09805 WP_306760615.1 2069013..2069300(+) (comEA) [Oceanimonas pelagia strain NTOU-MSR1]
ATGAAAAAACGATTAGCCCCTGCCCTGCTGGCAATGTTGCTGGCCACCGGAGCACCGGCCCTGGCCAACGAAGCCGACGC
CAAAGACGTGGTGGTTACCAGCGTCAACATCAACACCGCCACACCGGATCAGCTCGCCCAGCTATCCGGCGTCGGTCCGG
CCAAGGCTCAGGCCATTGTGGAATACCGGGATGCCAACGGTCCGTTCGCCTCGGTGGACGATCTGGCCCGGGTCAAGGGC
ATTGGCGAAGCCACGGTGGAAAAGAACCGGCACCTGCTCAGCAACTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(34-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

48.958

100

0.495
  comEA Vibrio cholerae strain A1552

48.958

100

0.495
  comEA Vibrio campbellii strain DS40M4

45.055

95.789

0.432
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

90.526

0.411
  comEA Legionella pneumophila str. Paris

38.776

100

0.4
  comEA Legionella pneumophila strain ERS1305867

38.776

100

0.4
  comEA Acinetobacter baylyi ADP1

66.071

58.947

0.389