Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   PUW21_RS20340 Genome accession   NZ_CP118167
Coordinates   3879948..3880067 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus subtilis strain 21855     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3874948..3885067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS20320 (PUW21_20320) albG 3875112..3875813 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  PUW21_RS20325 (PUW21_20325) ywhL 3875819..3877195 (-) 1377 WP_110109508.1 YncE family protein -
  PUW21_RS20330 (PUW21_20330) ywhK 3877234..3878589 (-) 1356 WP_015250986.1 YncE family protein -
  PUW21_RS22260 - 3878586..3878816 (-) 231 WP_024572000.1 hypothetical protein -
  PUW21_RS20335 (PUW21_20335) rapF 3878819..3879964 (+) 1146 WP_086344441.1 response regulator aspartate phosphatase RapF Regulator
  PUW21_RS20340 (PUW21_20340) phrF 3879948..3880067 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  PUW21_RS20345 (PUW21_20345) - 3880165..3880627 (+) 463 Protein_3951 YbaK/EbsC family protein -
  PUW21_RS20350 (PUW21_20350) speB 3880659..3881531 (-) 873 WP_003227545.1 agmatinase -
  PUW21_RS20355 (PUW21_20355) speE 3881592..3882422 (-) 831 WP_003227543.1 spermidine synthase -
  PUW21_RS20360 (PUW21_20360) pbpG 3882624..3884699 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=791011 PUW21_RS20340 WP_041334633.1 3879948..3880067(+) (phrF) [Bacillus subtilis strain 21855]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=791011 PUW21_RS20340 WP_041334633.1 3879948..3880067(+) (phrF) [Bacillus subtilis strain 21855]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487