Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   QMM10_RS09830 Genome accession   NZ_AP025938
Coordinates   1921260..1921664 (-) Length   134 a.a.
NCBI ID   WP_223842268.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916260..1926664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS09800 (PC1044_18910) - 1916560..1917435 (+) 876 WP_000669493.1 substrate-binding domain-containing protein -
  QMM10_RS09805 (PC1044_18920) pstC 1917553..1918416 (+) 864 WP_000165892.1 phosphate ABC transporter permease subunit PstC -
  QMM10_RS09810 (PC1044_18930) pstA 1918409..1919224 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  QMM10_RS09815 (PC1044_18940) pstB 1919226..1919978 (+) 753 WP_000536447.1 phosphate ABC transporter ATP-binding protein PstB -
  QMM10_RS09820 (PC1044_18950) phoU 1919993..1920643 (+) 651 WP_001245781.1 phosphate signaling complex protein PhoU -
  QMM10_RS09825 (PC1044_18960) - 1920711..1921145 (+) 435 Protein_1901 transposase -
  QMM10_RS09830 (PC1044_18970) comR 1921260..1921664 (-) 405 WP_223842268.1 helix-turn-helix transcriptional regulator Regulator
  QMM10_RS09835 (PC1044_18980) - 1921912..1922928 (+) 1017 WP_000415108.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  QMM10_RS09840 (PC1044_18990) galU 1922950..1923849 (+) 900 WP_000202229.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QMM10_RS09845 (PC1044_19000) - 1923916..1924593 (-) 678 WP_000658498.1 rhomboid family intramembrane serine protease -
  QMM10_RS09850 (PC1044_19010) - 1924577..1925116 (-) 540 WP_050204952.1 5-formyltetrahydrofolate cyclo-ligase -
  QMM10_RS09855 (PC1044_19020) - 1925128..1926258 (-) 1131 WP_000885100.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 16261.66 Da        Isoelectric Point: 4.5242

>NTDB_id=79099 QMM10_RS09830 WP_223842268.1 1921260..1921664(-) (comR) [Streptococcus pneumoniae strain PZ900701057]
MAKKISRSEFCGDESELSIRQLIRIENGESRPILTKLKYIAERLEVEDYKLMPSYIELDKEYLELKYFLMRTPTYEDETI
TQKKESVFDKIFEEYYDRLPEEERFIIPNYSYLALTNYTVQKLPEKLVEILSFW

Nucleotide


Download         Length: 405 bp        

>NTDB_id=79099 QMM10_RS09830 WP_223842268.1 1921260..1921664(-) (comR) [Streptococcus pneumoniae strain PZ900701057]
TTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTAGAATTGAAAA
TGGAGAATCCAGACCAATACTAACAAAGTTAAAATATATTGCTGAACGTTTGGAGGTTGAAGATTACAAGTTGATGCCAA
GTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGATGAAACTATC
ACCCAAAAGAAAGAGAGTGTTTTTGATAAGATTTTTGAAGAGTATTATGATAGGCTACCTGAGGAAGAAAGATTTATCAT
CCCAAATTATTCATATCTGGCACTAACGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATACTGTCCTTCT
GGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(60-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

54.63

80.597

0.44
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

54.717

79.104

0.433
  comR Streptococcus pyogenes MGAS315

52.778

80.597

0.425
  comR Streptococcus mutans UA159

50

80.597

0.403
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

48.039

76.119

0.366
  comR Streptococcus suis P1/7

46.226

79.104

0.366
  comR Streptococcus suis 05ZYH33

46.226

79.104

0.366

Multiple sequence alignment