Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PUV55_RS08735 Genome accession   NZ_CP118165
Coordinates   1764844..1765482 (-) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain XP11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759844..1770482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS08720 (PUV55_08720) - 1761049..1761807 (-) 759 WP_010786457.1 esterase family protein -
  PUV55_RS08725 (PUV55_08725) - 1761943..1763121 (-) 1179 WP_010786460.1 ATP-grasp domain-containing protein -
  PUV55_RS08730 (PUV55_08730) fumC 1763303..1764697 (-) 1395 WP_010786461.1 class II fumarate hydratase -
  PUV55_RS08735 (PUV55_08735) sxy/tfoX 1764844..1765482 (-) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  PUV55_RS08740 (PUV55_08740) rpsJ 1765941..1766252 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  PUV55_RS08745 (PUV55_08745) rplC 1766269..1766895 (+) 627 WP_010786462.1 50S ribosomal protein L3 -
  PUV55_RS08750 (PUV55_08750) rplD 1766911..1767513 (+) 603 WP_005711169.1 50S ribosomal protein L4 -
  PUV55_RS08755 (PUV55_08755) rplW 1767510..1767815 (+) 306 WP_005599290.1 50S ribosomal protein L23 -
  PUV55_RS08760 (PUV55_08760) rplB 1767836..1768657 (+) 822 WP_005711173.1 50S ribosomal protein L2 -
  PUV55_RS08765 (PUV55_08765) rpsS 1768686..1768961 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  PUV55_RS08770 (PUV55_08770) rplV 1768972..1769304 (+) 333 WP_005706427.1 50S ribosomal protein L22 -
  PUV55_RS08775 (PUV55_08775) rpsC 1769322..1770026 (+) 705 WP_010786465.1 30S ribosomal protein S3 -
  PUV55_RS08780 (PUV55_08780) rplP 1770039..1770449 (+) 411 WP_006249357.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=790915 PUV55_RS08735 WP_005711167.1 1764844..1765482(-) (sxy/tfoX) [Glaesserella parasuis strain XP11]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=790915 PUV55_RS08735 WP_005711167.1 1764844..1765482(-) (sxy/tfoX) [Glaesserella parasuis strain XP11]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGAGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377