Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUV55_RS03025 Genome accession   NZ_CP118165
Coordinates   591562..592101 (-) Length   179 a.a.
NCBI ID   WP_005714441.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 586562..597101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS02995 (PUV55_02995) argF 586749..587759 (-) 1011 WP_274360165.1 ornithine carbamoyltransferase -
  PUV55_RS03000 (PUV55_03000) - 587906..588184 (+) 279 WP_005712614.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PUV55_RS03005 (PUV55_03005) - 588195..588467 (+) 273 WP_005712616.1 HigA family addiction module antitoxin -
  PUV55_RS03010 (PUV55_03010) rhlB 588531..589751 (+) 1221 WP_005712618.1 ATP-dependent RNA helicase RhlB -
  PUV55_RS03015 (PUV55_03015) - 589818..590069 (+) 252 Protein_596 helicase HerA-like domain-containing protein -
  PUV55_RS03020 (PUV55_03020) - 590141..591355 (-) 1215 WP_021114868.1 ATP-binding protein -
  PUV55_RS03025 (PUV55_03025) ssb 591562..592101 (-) 540 WP_005714441.1 single-stranded DNA-binding protein Machinery gene
  PUV55_RS03030 (PUV55_03030) uvrA 592404..595232 (+) 2829 WP_261491223.1 excinuclease ABC subunit UvrA -
  PUV55_RS03035 (PUV55_03035) - 595316..595696 (+) 381 WP_010786782.1 YacL family protein -
  PUV55_RS03040 (PUV55_03040) - 595662..595913 (+) 252 WP_016527969.1 transcriptional regulator -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19843.77 Da        Isoelectric Point: 4.9833

>NTDB_id=790896 PUV55_RS03025 WP_005714441.1 591562..592101(-) (ssb) [Glaesserella parasuis strain XP11]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGGGWNQAPAPQNYNQGYNNDNYAQNNFGNAQPQTAKAPA
KPAPQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=790896 PUV55_RS03025 WP_005714441.1 591562..592101(-) (ssb) [Glaesserella parasuis strain XP11]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTCCAAAT
GCTAGATAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTGGTGGCTGGAACCAAGCACCTGCTCCGCAAAACT
ATAATCAAGGCTACAACAACGATAATTACGCACAAAATAACTTTGGCAATGCTCAACCACAAACCGCAAAAGCACCAGCA
AAACCAGCACCGCAAGCGGAACCGCCAATGGATAATTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

90.556

100

0.911
  ssb Vibrio cholerae strain A1552

51.053

100

0.542
  ssb Neisseria gonorrhoeae MS11

43.478

100

0.447
  ssb Neisseria meningitidis MC58

42.703

100

0.441