Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GsuE55_RS14200 Genome accession   NZ_AP022557
Coordinates   2871835..2872329 (-) Length   164 a.a.
NCBI ID   WP_033017875.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain E55-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2866835..2877329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS14180 (GsuE55_28670) rplI 2867800..2868249 (-) 450 WP_033842777.1 50S ribosomal protein L9 -
  GsuE55_RS14185 (GsuE55_28680) - 2868246..2870219 (-) 1974 WP_033842774.1 DHH family phosphoesterase -
  GsuE55_RS14190 (GsuE55_28690) - 2870267..2871193 (-) 927 WP_033842773.1 YybS family protein -
  GsuE55_RS14195 (GsuE55_28700) rpsR 2871262..2871498 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  GsuE55_RS14200 (GsuE55_28710) ssbA 2871835..2872329 (-) 495 WP_033017875.1 single-stranded DNA-binding protein Machinery gene
  GsuE55_RS14205 (GsuE55_28720) rpsF 2872359..2872646 (-) 288 WP_033842772.1 30S ribosomal protein S6 -
  GsuE55_RS14210 (GsuE55_28730) ychF 2872843..2873943 (-) 1101 WP_033842771.1 redox-regulated ATPase YchF -
  GsuE55_RS14215 (GsuE55_28740) - 2873971..2874168 (-) 198 WP_033017872.1 DUF951 domain-containing protein -
  GsuE55_RS14220 (GsuE55_28750) - 2874188..2875087 (-) 900 WP_156102679.1 mechanosensitive ion channel family protein -
  GsuE55_RS14225 (GsuE55_28760) yyaC 2875282..2875905 (+) 624 WP_033842769.1 spore protease YyaC -
  GsuE55_RS14230 (GsuE55_28770) - 2876300..2876998 (-) 699 WP_033842768.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18370.31 Da        Isoelectric Point: 4.5972

>NTDB_id=78630 GsuE55_RS14200 WP_033017875.1 2871835..2872329(-) (ssbA) [Geobacillus subterraneus strain E55-1]
MINRVILVGRLTKDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGVSEQRGAAAGGYYGDPFPFGQDQNHRYPNDKQAGRIDEDPFADDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=78630 GsuE55_RS14200 WP_033017875.1 2871835..2872329(-) (ssbA) [Geobacillus subterraneus strain E55-1]
ATGATTAACCGCGTCATTTTAGTCGGCAGGTTAACGAAAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTCACGCTTGCCGTCAACCGGCCGTTTACAAACCAGCAAGGCGAACGGGAAACGGATTTTATTCAATGCGTCGTTT
GGCGCCGCCAAGCGGAAAATGTGGCGAATTTCCTCAAAAAGGGGAGTTTGGCTGGAGTCGATGGCCGGCTGCAGACCCGC
AGCTATGAAAATCAAGAAGGCCGGCGCGTCTATGTCACGGAAGTGGTGGCTGACAGCGTCCAATTTTTAGAGCCCAAAGG
CGTGAGCGAGCAGCGAGGGGCAGCAGCAGGCGGCTACTATGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGAT
ATCCGAACGACAAACAGGCGGGCCGCATCGATGAAGATCCTTTTGCCGATGACGGTCAACCGATTGATATTTCCGATGAC
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.241

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.634

0.415
  ssb Vibrio cholerae strain A1552

35.028

100

0.378
  ssb Glaesserella parasuis strain SC1401

32.973

100

0.372

Multiple sequence alignment