Detailed information NTG0783419

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: MGCS35823_RS00795
• Genome accession: NZ_CP117289
• Coordinates: 127707..128738 (+)
• Length: 343 a.a.
• NCBI ID: WP_084916952.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 122707..133738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MGCS35823_RS00785 (MGCS35823_00320)	-	126384..126749 (+)	366	WP_003055257.1	DUF1033 family protein	-
MGCS35823_RS00790 (MGCS35823_00322)	comGA/cglA	126830..127771 (+)	942	WP_014611930.1	competence type IV pilus ATPase ComGA	Machinery gene
MGCS35823_RS00795 (MGCS35823_00324)	comYB	127707..128738 (+)	1032	WP_084916952.1	competence type IV pilus assembly protein ComGB	Machinery gene
MGCS35823_RS00800 (MGCS35823_00326)	comYC	128740..129066 (+)	327	WP_084916953.1	competence type IV pilus major pilin ComGC	Machinery gene
MGCS35823_RS00805 (MGCS35823_00328)	comGD	129041..129469 (+)	429	WP_275910579.1	competence type IV pilus minor pilin ComGD	-
MGCS35823_RS00810 (MGCS35823_00330)	comGE	129426..129722 (+)	297	WP_080982572.1	competence type IV pilus minor pilin ComGE	-
MGCS35823_RS00815 (MGCS35823_00332)	comGF	129703..130143 (+)	441	WP_003061780.1	competence type IV pilus minor pilin ComGF	-
MGCS35823_RS00820 (MGCS35823_00334)	comGG	130172..130495 (+)	324	WP_227985720.1	competence type IV pilus minor pilin ComGG	-
MGCS35823_RS00825 (MGCS35823_00336)	comYH	130558..131511 (+)	954	WP_003060701.1	class I SAM-dependent methyltransferase	Machinery gene
MGCS35823_RS00830 (MGCS35823_00338)	-	131570..132766 (+)	1197	WP_084916957.1	acetate kinase	-
MGCS35823_RS00835 (MGCS35823_00340)	-	133073..133279 (+)	207	WP_003058508.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 38965.39 Da
• Isoelectric Point: 9.2055

>NTDB_id=783419 MGCS35823_RS00795 WP_084916952.1 127707..128738(+) (comYB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823]
MTFLQRDISVRSKQGLKKLSSKEQYKLIQLLANLLLTGFNLAEIIAFLTKSHLIPEPYVLRMEEALLKGRGLADMLAGIG
FSDAILTQISLADGHGNIETTLVNIQGYLNQMAKLKRKTIEVVTYPIILLVFLFVMILGLRHYVMPQLEAQNQLTIFLTH
FPAIFFGIILFIGVLLGGIWLHWRSQSRLKLFIHFSAYPVLGKLLQQYLTAYYAREWGTLIGQGLELPVILDIMAMEKSL
FMQELAEDIRVSLLAGQAFHDKVATYPFFKKELSLMITYGEIKSKLGSELEIYAQESWTQFFSQLHQATQFIQPIIFLVI
ALTIVMIYAAILLPIYQNMGGVL

Nucleotide

• Length: 1032 bp

>NTDB_id=783419 MGCS35823_RS00795 WP_084916952.1 127707..128738(+) (comYB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823]
ATGACCTTCTTGCAGCGGGACATCTCAGTCCGGAGCAAGCAAGGTTTGAAAAAATTATCCAGTAAGGAACAATACAAACT
AATTCAGCTATTAGCTAACCTTTTGTTAACAGGATTTAACTTGGCTGAGATAATAGCTTTCTTAACAAAAAGTCATTTGA
TTCCCGAGCCCTATGTTCTCCGCATGGAAGAAGCACTCTTAAAAGGTCGAGGGCTGGCAGATATGTTAGCTGGGATAGGT
TTTTCGGATGCTATTTTAACTCAAATTAGTTTAGCAGATGGTCACGGAAACATTGAGACGACGCTTGTTAATATTCAGGG
CTATCTCAACCAAATGGCTAAACTTAAACGAAAAACCATTGAAGTCGTCACCTATCCGATTATTCTCCTGGTATTTCTTT
TTGTGATGATATTAGGGTTAAGGCATTATGTTATGCCTCAATTAGAAGCTCAAAATCAGCTTACTATTTTTCTGACTCAT
TTTCCAGCTATTTTCTTTGGTATTATCCTTTTTATAGGTGTGCTGTTAGGGGGAATTTGGCTGCATTGGCGATCGCAAAG
TCGCCTCAAGCTTTTTATTCACTTCAGTGCTTATCCTGTTTTAGGGAAACTCTTACAACAGTATCTGACGGCTTATTATG
CTAGAGAATGGGGAACATTGATTGGACAGGGACTTGAATTACCAGTCATTCTGGATATTATGGCCATGGAGAAATCTTTA
TTCATGCAAGAATTGGCTGAAGATATTCGAGTTAGTTTATTGGCAGGACAAGCTTTTCATGATAAGGTAGCTACCTATCC
TTTCTTTAAAAAAGAGTTAAGTTTGATGATTACTTATGGAGAGATTAAATCCAAGTTAGGAAGTGAACTAGAGATTTATG
CTCAAGAGAGTTGGACTCAGTTTTTCAGCCAACTTCATCAAGCAACTCAGTTTATTCAACCGATTATCTTTTTAGTGATT
GCTCTGACGATTGTCATGATTTATGCAGCAATTTTATTACCAATTTATCAAAATATGGGAGGCGTTTTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (28-146)

• Type II secretion system (T2SS), protein F (T2SSF) (214-334)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	53.392	98.834	0.528
comYB	Streptococcus mutans UA159	53.392	98.834	0.528
comYB	Streptococcus gordonii str. Challis substr. CH1	48.673	98.834	0.481
comGB/cglB	Streptococcus mitis NCTC 12261	45.97	97.668	0.449
comGB/cglB	Streptococcus mitis SK321	45.345	97.085	0.44
comGB/cglB	Streptococcus pneumoniae Rx1	43.844	97.085	0.426
comGB/cglB	Streptococcus pneumoniae D39	43.844	97.085	0.426
comGB/cglB	Streptococcus pneumoniae R6	43.844	97.085	0.426
comGB/cglB	Streptococcus pneumoniae TIGR4	43.844	97.085	0.426
comGB	Lactococcus lactis subsp. cremoris KW2	42.478	98.834	0.42