Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA   Type   Machinery gene
Locus tag   MGCS35823_RS00790 Genome accession   NZ_CP117289
Coordinates   126830..127771 (+) Length   313 a.a.
NCBI ID   WP_014611930.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121830..132771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS35823_RS00780 (MGCS35823_00318) rpoC 122540..126181 (+) 3642 WP_037589802.1 DNA-directed RNA polymerase subunit beta' -
  MGCS35823_RS00785 (MGCS35823_00320) - 126384..126749 (+) 366 WP_003055257.1 DUF1033 family protein -
  MGCS35823_RS00790 (MGCS35823_00322) comGA/cglA 126830..127771 (+) 942 WP_014611930.1 competence type IV pilus ATPase ComGA Machinery gene
  MGCS35823_RS00795 (MGCS35823_00324) comYB 127707..128738 (+) 1032 WP_084916952.1 competence type IV pilus assembly protein ComGB Machinery gene
  MGCS35823_RS00800 (MGCS35823_00326) comYC 128740..129066 (+) 327 WP_084916953.1 competence type IV pilus major pilin ComGC Machinery gene
  MGCS35823_RS00805 (MGCS35823_00328) comGD 129041..129469 (+) 429 WP_275910579.1 competence type IV pilus minor pilin ComGD -
  MGCS35823_RS00810 (MGCS35823_00330) comGE 129426..129722 (+) 297 WP_080982572.1 competence type IV pilus minor pilin ComGE -
  MGCS35823_RS00815 (MGCS35823_00332) comGF 129703..130143 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF -
  MGCS35823_RS00820 (MGCS35823_00334) comGG 130172..130495 (+) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  MGCS35823_RS00825 (MGCS35823_00336) comYH 130558..131511 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  MGCS35823_RS00830 (MGCS35823_00338) - 131570..132766 (+) 1197 WP_084916957.1 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35165.29 Da        Isoelectric Point: 7.5610

>NTDB_id=783418 MGCS35823_RS00790 WP_014611930.1 126830..127771(+) (comGA/cglA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823]
MVQALARSILKEAEQIQAQDIYILPKENQYELLIRVGDERRLVDVYRGDRMAHLISHFKFVAGMTVGEKRRCQVGSCDYD
IGGDTLLSLRLSSVGNYRGQESLVIRLLHHQQRSLHYWFDGLKTVARQIGGRGLYLFAGPVGSGKTTLMHQLIADYYQGA
QVISIEDPVEIKNHQALQLQVNDSIGMTYDNLIKLSLRHRPDILIIGEIRDSQTARAVIRASLTGVLVFSTVHAKSISGV
YARLLELGVTRAELDNCLALVAYQRLLNGGALIDSTQTEFEHYSPNQWNQKIDDLLAAGHLSPEQARFEKIIQ

Nucleotide


Download         Length: 942 bp        

>NTDB_id=783418 MGCS35823_RS00790 WP_014611930.1 126830..127771(+) (comGA/cglA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823]
ATGGTACAAGCATTAGCAAGATCTATTTTGAAAGAAGCTGAGCAGATTCAAGCTCAAGATATCTATATTTTGCCAAAGGA
AAATCAGTATGAGCTATTGATAAGGGTAGGAGATGAAAGGAGATTGGTGGATGTTTATCGGGGCGATCGGATGGCTCATC
TTATTAGTCACTTTAAGTTCGTTGCAGGAATGACCGTTGGTGAGAAACGACGCTGTCAAGTCGGTTCTTGTGATTATGAT
ATCGGTGGAGACACACTTTTGTCTCTACGCCTGTCTAGTGTTGGAAATTACCGTGGACAAGAGAGCCTAGTGATTCGGTT
ATTACATCATCAACAAAGAAGTTTACATTACTGGTTTGACGGACTGAAAACAGTTGCACGTCAGATTGGAGGCCGAGGAC
TCTATCTTTTTGCAGGTCCAGTCGGATCAGGCAAAACGACTTTGATGCACCAATTGATTGCTGATTATTATCAAGGAGCA
CAGGTCATTAGCATAGAAGATCCGGTGGAAATTAAAAATCATCAAGCGCTCCAATTACAAGTTAATGATAGTATTGGCAT
GACTTACGACAACTTGATCAAACTATCTTTACGGCATCGCCCTGATATTTTAATCATTGGTGAAATTCGAGACAGCCAGA
CAGCTAGAGCGGTTATTAGAGCAAGTTTAACAGGTGTCTTAGTATTTTCAACAGTTCATGCCAAAAGCATTTCTGGTGTT
TATGCCAGATTACTAGAACTAGGAGTGACAAGAGCAGAATTAGACAATTGTTTGGCTTTGGTTGCTTACCAACGATTGCT
TAATGGAGGAGCATTGATTGACTCAACTCAAACAGAATTTGAACACTACTCACCAAACCAATGGAATCAGAAAATTGATG
ACCTTCTTGCAGCGGGACATCTCAGTCCGGAGCAAGCAAGGTTTGAAAAAATTATCCAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.935

99.042

0.613
  comYA Streptococcus mutans UA140

61.415

99.361

0.61
  comYA Streptococcus mutans UA159

61.415

99.361

0.61
  comYA Streptococcus gordonii str. Challis substr. CH1

60.772

99.361

0.604
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.807

99.361

0.594
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae D39

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae R6

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

59.486

99.361

0.591
  comGA Lactococcus lactis subsp. cremoris KW2

52.412

99.361

0.521
  comGA Latilactobacillus sakei subsp. sakei 23K

38.908

93.61

0.364