Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MGCS35957_RS05680 Genome accession   NZ_CP117288
Coordinates   1111014..1111856 (-) Length   280 a.a.
NCBI ID   WP_084916845.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1106014..1116856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS35957_RS05665 (MGCS35957_02314) - 1106855..1107799 (+) 945 WP_012766955.1 IS982 family transposase -
  MGCS35957_RS05670 (MGCS35957_02316) - 1107822..1108705 (+) 884 Protein_1075 LysR family transcriptional regulator -
  MGCS35957_RS05675 (MGCS35957_02318) topA 1108781..1110913 (-) 2133 WP_014612281.1 type I DNA topoisomerase -
  MGCS35957_RS05680 (MGCS35957_02320) dprA 1111014..1111856 (-) 843 WP_084916845.1 DNA-processing protein DprA Machinery gene
  MGCS35957_RS05685 (MGCS35957_02322) - 1111964..1112734 (-) 771 WP_022554642.1 ribonuclease HII -
  MGCS35957_RS05690 (MGCS35957_02324) ylqF 1112724..1113572 (-) 849 WP_003062503.1 ribosome biogenesis GTPase YlqF -
  MGCS35957_RS05695 (MGCS35957_02326) - 1114295..1114684 (-) 390 WP_232089461.1 hypothetical protein -
  MGCS35957_RS05700 (MGCS35957_02328) - 1115034..1115474 (+) 441 WP_003050852.1 DUF1836 domain-containing protein -
  MGCS35957_RS05705 (MGCS35957_02330) - 1115471..1116121 (+) 651 WP_003061861.1 hemolysin III family protein -

Sequence


Protein


Download         Length: 280 a.a.        Molecular weight: 31264.29 Da        Isoelectric Point: 9.0469

>NTDB_id=783389 MGCS35957_RS05680 WP_084916845.1 1111014..1111856(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957]
MNHFELYKLKKAGLTNKNILNILDYQKQQEKSLSLRDMAVVSGCKHPSHFIETYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLDKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQIFLGKNHLVLTEYGPGEEALSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGESEGCLQLIKEGATCVTSGMDILSEYQK

Nucleotide


Download         Length: 843 bp        

>NTDB_id=783389 MGCS35957_RS05680 WP_084916845.1 1111014..1111856(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAGGCTGGACTGACTAATAAAAATATTCTCAATATTCTTGACTACCAAAA
GCAACAGGAAAAATCGTTGTCGCTTCGAGACATGGCCGTTGTTTCCGGTTGTAAGCACCCGTCTCACTTTATAGAAACCT
ATAAGCAGTTAGATATCCAAAAGTTAAAAATGGAATTTAAACAATTCCCTAGTATTTCTATCCTAGATAAACATTACCCA
ATGGCTTTGAAAGAAATATATAATCCGCCCGTCCTCTTGTTTTTTCAAGGCAATTTAGACCTTCTTGATAAACCTAAATT
AGCCATTGTGGGCTCAAGGCGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACTATC
GCTATTATTGGAACAGGATTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAATTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAGGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GTCGAGGTATTCTCGTCGTTGAAGCAAAAAATCGCTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAGGGTCGA
GATATTTTTGCTGTTCCAGGAAACATTTTGGACGGCGAATCTGAAGGTTGTTTACAGCTTATAAAAGAGGGAGCAACCTG
CGTCACATCAGGGATGGACATCCTTTCTGAATATCAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.266

99.286

0.668

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus mitis SK321

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

59.857

99.643

0.596

  dprA Lactococcus lactis subsp. cremoris KW2

57.554

99.286

0.571

  dprA Legionella pneumophila strain ERS1305867

42.917

85.714

0.368