Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   PQ615_RS03940 Genome accession   NZ_CP117058
Coordinates   814482..815192 (+) Length   236 a.a.
NCBI ID   WP_121796642.1    Uniprot ID   -
Organism   Streptococcus iniae strain LSSM211007SI     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 809482..820192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS03915 (PQ615_03910) - 810189..811196 (+) 1008 WP_003101345.1 DUF3114 domain-containing protein -
  PQ615_RS03920 (PQ615_03915) - 811234..811881 (-) 648 WP_003101341.1 amino acid ABC transporter permease -
  PQ615_RS03925 (PQ615_03920) - 811897..812598 (-) 702 WP_003101340.1 amino acid ABC transporter permease -
  PQ615_RS03930 (PQ615_03925) - 812613..813431 (-) 819 WP_121796643.1 transporter substrate-binding domain-containing protein -
  PQ615_RS03935 (PQ615_03930) - 813428..814225 (-) 798 WP_003101338.1 amino acid ABC transporter ATP-binding protein -
  PQ615_RS03940 (PQ615_03935) vicR 814482..815192 (+) 711 WP_121796642.1 response regulator YycF Regulator
  PQ615_RS03945 (PQ615_03940) vicK 815185..816543 (+) 1359 WP_003101335.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PQ615_RS03950 (PQ615_03945) vicX 816547..817356 (+) 810 WP_003101333.1 MBL fold metallo-hydrolase Regulator
  PQ615_RS03955 (PQ615_03950) rnc 817459..818151 (+) 693 WP_003101331.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27048.86 Da        Isoelectric Point: 5.0030

>NTDB_id=782439 PQ615_RS03940 WP_121796642.1 814482..815192(+) (vicR) [Streptococcus iniae strain LSSM211007SI]
MKKILIVDDEKTISDIIKFNLTKEGYETVTAFDGREAVTLFEEEKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIVMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASAGNQELTIGNLQILPDAFLAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSHD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=782439 PQ615_RS03940 WP_121796642.1 814482..815192(+) (vicR) [Streptococcus iniae strain LSSM211007SI]
ATGAAGAAAATTCTTATAGTTGATGATGAAAAAACGATTTCAGATATCATCAAATTTAATTTAACAAAAGAAGGATATGA
AACGGTGACAGCTTTTGATGGACGTGAAGCAGTTACCTTGTTTGAAGAAGAAAAACCAGACTTGGTTATTTTAGATTTGA
TGTTACCTGAAATGGATGGTTTAGAAGTTGCTAAAGAAATTCGTAAAACAAGCCACATTCCAATTGTTATGTTATCAGCA
AAAGATAGTGAGTTTGATAAGGTCATCGGTCTTGAAATTGGTGCAGATGACTATGTGACAAAACCATTTTCTAATCGTGA
GCTATTAGCTCGTGTTAAGGCGCATTTGCGCCGTACAGAAACCATCGAAACAGCAGTTGCTGAAGAAAATGCCTCAGCTG
GTAATCAAGAGTTAACGATTGGCAACCTTCAAATCTTGCCAGATGCCTTTTTAGCTAAAAAGCATGGTCAAGAGGTTGAG
TTAACCCACCGTGAATTTGAATTATTGCATCACTTAGCCAACCATATTGGGCAAGTAATGACTCGTGAACATTTGCTTGA
AACTGTTTGGGGCTATGATTATTTTGGTGATGTTAGAACAGTTGACGTAACGGTACGTCGTTTGCGAGAAAAAATCGAAG
ATACTCCTAGCCGTCCTGAATATATTTTGACAAGACGAGGAGTTGGATACTACATGAAATCACATGACTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

87.712

100

0.877
  micA Streptococcus pneumoniae Cp1015

77.447

99.576

0.771
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.534

98.305

0.428
  scnR Streptococcus mutans UA159

37.768

98.729

0.373