Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PQ615_RS03950 Genome accession   NZ_CP117058
Coordinates   816547..817356 (+) Length   269 a.a.
NCBI ID   WP_003101333.1    Uniprot ID   A0A1J0MZV5
Organism   Streptococcus iniae strain LSSM211007SI     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 811547..822356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS03925 (PQ615_03920) - 811897..812598 (-) 702 WP_003101340.1 amino acid ABC transporter permease -
  PQ615_RS03930 (PQ615_03925) - 812613..813431 (-) 819 WP_121796643.1 transporter substrate-binding domain-containing protein -
  PQ615_RS03935 (PQ615_03930) - 813428..814225 (-) 798 WP_003101338.1 amino acid ABC transporter ATP-binding protein -
  PQ615_RS03940 (PQ615_03935) vicR 814482..815192 (+) 711 WP_121796642.1 response regulator YycF Regulator
  PQ615_RS03945 (PQ615_03940) vicK 815185..816543 (+) 1359 WP_003101335.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PQ615_RS03950 (PQ615_03945) vicX 816547..817356 (+) 810 WP_003101333.1 MBL fold metallo-hydrolase Regulator
  PQ615_RS03955 (PQ615_03950) rnc 817459..818151 (+) 693 WP_003101331.1 ribonuclease III -
  PQ615_RS03960 (PQ615_03955) smc 818152..821697 (+) 3546 WP_003101330.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30014.07 Da        Isoelectric Point: 5.5565

>NTDB_id=782441 PQ615_RS03950 WP_003101333.1 816547..817356(+) (vicX) [Streptococcus iniae strain LSSM211007SI]
MEEVGFKYSILASGSTGNSFYIETPKKKLLVDAGLTGKKVTSLLAEIDRSPEDLDAILITHEHSDHIKGVGVLARKYNLD
IYANSKTWQMIDHRQMLGKIDVAQKHVFERDKMMTFGDLDVESFGVSHDAADPQFYRFMKDGKSFVMLTDTGYVSDRLSG
VIENADAYLIESNHDIEILRSGSYPWSLKQRILSDQGHLSNEDGAAAMIRSMGNKTKKIFLGHLSKENNIKELAHMTMEN
QLAMADLPLGSQFTVFDTSPDTACPLSDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=782441 PQ615_RS03950 WP_003101333.1 816547..817356(+) (vicX) [Streptococcus iniae strain LSSM211007SI]
ATGGAAGAAGTAGGATTTAAATACAGTATTTTAGCATCTGGATCGACAGGTAATAGCTTCTATATTGAAACACCTAAGAA
GAAATTATTGGTTGATGCAGGCTTAACAGGAAAAAAAGTAACCAGCTTGCTAGCTGAGATAGACCGCTCTCCTGAAGATT
TAGACGCCATATTAATTACACATGAGCATTCAGATCATATCAAGGGAGTTGGTGTTCTAGCTCGCAAATATAACCTTGAT
ATTTACGCCAATTCAAAAACATGGCAAATGATTGATCACCGTCAGATGCTTGGAAAGATTGATGTGGCACAAAAACACGT
CTTTGAAAGAGATAAGATGATGACTTTCGGGGATTTAGATGTCGAGAGTTTCGGTGTTAGCCACGACGCTGCTGATCCTC
AATTTTACCGTTTTATGAAAGATGGGAAATCCTTTGTCATGTTAACAGATACAGGTTATGTTAGTGATAGGCTTTCTGGT
GTCATCGAGAACGCTGATGCTTACTTGATTGAATCCAATCATGATATCGAAATTCTAAGGTCAGGTTCTTACCCTTGGAG
TCTCAAACAGCGAATCTTATCGGATCAAGGTCATTTGTCAAATGAAGACGGTGCGGCAGCTATGATACGCAGTATGGGAA
ATAAGACCAAAAAAATCTTTTTGGGGCATTTAAGTAAAGAAAATAATATCAAAGAATTAGCGCACATGACCATGGAAAAT
CAGTTAGCAATGGCAGATTTGCCTTTAGGGTCACAATTTACTGTTTTTGATACCTCACCTGATACTGCCTGTCCTTTATC
GGATATCTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0MZV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

72.862

100

0.729