Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q2T91_RS24465 Genome accession   NZ_CP130500
Coordinates   3486564..3487103 (-) Length   179 a.a.
NCBI ID   WP_197360754.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain DG-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3481564..3492103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T91_RS24435 (Q2T91_24425) - 3481629..3482492 (+) 864 WP_011000389.1 polysaccharide deacetylase family protein -
  Q2T91_RS24440 (Q2T91_24430) - 3482576..3483793 (+) 1218 WP_197361390.1 beta-ketoacyl-[acyl-carrier-protein] synthase family protein -
  Q2T91_RS24445 (Q2T91_24435) - 3483790..3484611 (+) 822 WP_011000387.1 beta-ketoacyl synthase chain length factor -
  Q2T91_RS24450 (Q2T91_24440) - 3484608..3485117 (+) 510 WP_016724277.1 hotdog family protein -
  Q2T91_RS24455 (Q2T91_24445) - 3485147..3485404 (+) 258 WP_011000385.1 hypothetical protein -
  Q2T91_RS24460 (Q2T91_24450) - 3485820..3486394 (-) 575 Protein_3214 transposase -
  Q2T91_RS24465 (Q2T91_24455) ssb 3486564..3487103 (-) 540 WP_197360754.1 single-stranded DNA-binding protein Machinery gene
  Q2T91_RS24470 (Q2T91_24460) - 3487151..3488314 (-) 1164 WP_011000382.1 MFS transporter -
  Q2T91_RS24475 (Q2T91_24465) uvrA 3488537..3491401 (+) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  Q2T91_RS24480 (Q2T91_24470) - 3491481..3491966 (+) 486 WP_011000380.1 adenosine-specific kinase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18754.59 Da        Isoelectric Point: 5.9786

>NTDB_id=782345 Q2T91_RS24465 WP_197360754.1 3486564..3487103(-) (ssb) [Ralstonia pseudosolanacearum strain DG-3]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYVEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGSRQGMGGEGGGGGGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQGGGA
RRQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=782345 Q2T91_RS24465 WP_197360754.1 3486564..3487103(-) (ssb) [Ralstonia pseudosolanacearum strain DG-3]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCCGAAATTGCCGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACGTCGAAGGC
CGCCTCAAGACCCGCCAGTGGGAGAAGGACGGCCAGAAACAGTACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
CGGCAGCCGCCAGGGCATGGGCGGCGAGGGCGGTGGCGGCGGCGGTGGTGGCTACTCGCGCGGCGAATCGTCGGGAGGTG
GCGGTTACGGCGGTGGCCGTGCCCAGGGCGGCGGCGGTATGAGCCGCGGCGAAGGCGGTGGTGGTCAGGGCGGCGGCGCG
CGCCGTCAGCAGGCGCCTTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.733

100

0.52
  ssb Vibrio cholerae strain A1552

46.774

100

0.486
  ssb Neisseria meningitidis MC58

43.333

100

0.436
  ssb Neisseria gonorrhoeae MS11

42.778

100

0.43
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.43

100

0.374