Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   Q2T91_RS24475 Genome accession   NZ_CP130500
Coordinates   3488537..3491401 (+) Length   954 a.a.
NCBI ID   WP_011000381.1    Uniprot ID   Q8Y2B6
Organism   Ralstonia pseudosolanacearum strain DG-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3483537..3496401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T91_RS24445 (Q2T91_24435) - 3483790..3484611 (+) 822 WP_011000387.1 beta-ketoacyl synthase chain length factor -
  Q2T91_RS24450 (Q2T91_24440) - 3484608..3485117 (+) 510 WP_016724277.1 hotdog family protein -
  Q2T91_RS24455 (Q2T91_24445) - 3485147..3485404 (+) 258 WP_011000385.1 hypothetical protein -
  Q2T91_RS24460 (Q2T91_24450) - 3485820..3486394 (-) 575 Protein_3214 transposase -
  Q2T91_RS24465 (Q2T91_24455) ssb 3486564..3487103 (-) 540 WP_197360754.1 single-stranded DNA-binding protein Machinery gene
  Q2T91_RS24470 (Q2T91_24460) - 3487151..3488314 (-) 1164 WP_011000382.1 MFS transporter -
  Q2T91_RS24475 (Q2T91_24465) uvrA 3488537..3491401 (+) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  Q2T91_RS24480 (Q2T91_24470) - 3491481..3491966 (+) 486 WP_011000380.1 adenosine-specific kinase -
  Q2T91_RS24485 (Q2T91_24475) - 3492067..3492684 (-) 618 WP_118872406.1 LysE family translocator -
  Q2T91_RS24490 (Q2T91_24480) - 3492784..3493377 (-) 594 WP_019717494.1 adenine phosphoribosyltransferase -
  Q2T91_RS24495 (Q2T91_24485) - 3493510..3494088 (+) 579 WP_011000377.1 DJ-1/PfpI family protein -
  Q2T91_RS24500 (Q2T91_24490) - 3494133..3494537 (+) 405 WP_011000376.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 954 a.a.        Molecular weight: 105656.19 Da        Isoelectric Point: 6.9429

>NTDB_id=782346 Q2T91_RS24475 WP_011000381.1 3488537..3491401(+) (uvrA) [Ralstonia pseudosolanacearum strain DG-3]
MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS
PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKG
EHVDLFEAMQAQGFVRFRIRSGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADG
RALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDR
RNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSGKQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIA
VREELAKYQNNQACPECEGTRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDE
DMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSLTGEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNA
DIPVGLLTCVTGVSGSGKSTLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLYKGKNITEVL
EMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIE
LLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKRK

Nucleotide


Download         Length: 2865 bp        

>NTDB_id=782346 Q2T91_RS24475 WP_011000381.1 3488537..3491401(+) (uvrA) [Ralstonia pseudosolanacearum strain DG-3]
ATGGAAGCCATCAAGATTCGTGGGGCCCGGACCCACAACCTGAAGAACATCAACCTCGATCTGCCGCGCAACCAGCTGGT
GGTCATCACGGGGCTGTCGGGGTCGGGCAAGTCGTCGCTCGCGTTCGACACACTCTATGCGGAAGGGCAGCGCCGCTACG
TGGAGTCACTGTCGGCCTATGCGCGGCAGTTCCTGCAGCTGATGGAAAAGCCGGACGTCGACCTGATCGAAGGCCTGTCG
CCGGCCATCTCGATCGAACAGAAGGCCACCAGCCACAACCCGCGCTCCACCGTCGGCACCGTCACCGAGATCCACGACTA
CCTGCGCCTGCTGTACGCCCGCGCCGGCACGCCCTACTGCCCGGAGCACGGCCAGCCGCTGGAAGCGCAGAGCGTGTCGC
AGATGGTGGATGCCGTGCTGGCGCTGCCGGCCGACACCAAGCTGATGATCCTGGCGCCCGTGGTGACCAACCGCAAGGGC
GAGCACGTGGACCTGTTCGAGGCGATGCAGGCGCAGGGCTTCGTGCGCTTCCGCATCCGCTCGGGCGGCGGCACGGCGCA
CGAGGCCGAAGCCAAGGTCTACGAGGTCGACGCGCTGCCCAAGCTGAAGAAGAACGACAAGCACGCCATCGAGGTGGTGG
TCGATCGCGTCAAGGTCAACCCGGAACTCAAGCAGCGCCTGGCCGAATCCTTCGAGACCGCGCTGCGCCTGGCCGACGGC
CGCGCCCTCGCGCTGGAGATGGACACGGGCAAGGAGCACGTCTTCAGCTCCAAGTTCGCCTGCCCGATCTGCTCGTATTC
GCTGCCGGAGCTGGAGCCGCGCCTGTTCTCGTTCAACAACCCGATGGGCGCCTGCCCCCATTGCGACGGCCTGGGCCAGA
TCACCTTCTTCGACCCGAAGCGCGTGGTGGCCTTCCCCAACCTGTCGCTGGCCTCGGGCGCCATCAAGGGCTGGGACCGC
CGCAACCAGTTCTACTTCCAGATGCTGCAGAGCCTGGCGGCGTTCTACGACTTCGACACCGACACGCCATTCGAAGAGCT
GCCCAGTGAAGTCCAGGACGTCGTGCTGCAGGGCTCGGGCAAGCAGCAGATCCCGTTCACGTACATCAACGAACGCGGCC
GCACCACGGTGCGCGAGCATGCCTTCGAGGGCATCATCCCCAACCTGGAGCGGCGCTACAAGGAAACCGACTCCATCGCC
GTGCGCGAAGAGCTGGCCAAGTACCAGAACAACCAGGCCTGCCCCGAGTGCGAGGGCACGCGCCTGCGCCGCGAGGCGCG
CCACGTCAAGCTCGGCGACAGCGACCAGGCCCGCGCCATCTACGAGATCAACGGCTGGCCGCTGCGCGATGCGCTCACGT
ATTTCCTCACGCTGAACCTGCACGGCGCCAAGCGCGAGATCGCCGACAAGATCGTCCAGGAAATCACCTCGCGGCTGAAC
TTCCTGAACAACGTCGGGCTCGACTACCTCTCGCTGGAGCGCAGCGCCGACACGCTCTCCGGCGGCGAGGCGCAGCGCAT
CCGCCTGGCCTCGCAGATCGGCTCGGGCCTGACCGGCGTGATGTACGTGCTGGACGAGCCCTCCATCGGCCTGCACCAGC
GCGACAACGACCGGCTGATCGGCACCCTCAAGCACCTGCGCGACCTCGGCAACTCGGTGCTGGTGGTCGAGCACGATGAA
GACATGATCCGCGCCTCGGACCACGTGGTCGACATCGGCCCCGGCGCCGGCGTGCACGGCGGCCAGATCATCGCCGAAGG
CACGCCCAGGCAGATCGAGCGGTCACCCGGCTCGCTGACCGGCGAATACCTGTCGGGCAAGCGCCGCATCGAGGTGCCCA
AGCAGCGCACCGCGCCCGACGAAGCGCGCTGGCTGCGCATCGTCAACGCGTCGGGCAACAACCTGAAGCACGTCAACGCC
GACATCCCGGTCGGGCTGCTCACCTGCGTGACGGGCGTATCGGGCTCGGGCAAATCGACGCTGATCAACGACACGCTGTA
CAACGCGGTGGCGCGCCACCTCTACGGCTCCACCCCGGAGCCCACCGCGCACGACCGCATCGACGGCCTGGAGCACTTCG
ACAAGGTCATCAACGTCGACCAGTCGCCGATCGGCCGCACCCCGCGCTCCAACCCGGCCACCTACACCGGCCTGTTCACG
CCGATCCGCGAGCTGTATGCGGGCGTGCCGGCCGCCAAGGAGCGCGGCTACGACCCGGGCCGCTTCTCGTTCAACGTCAA
GGGCGGCCGCTGCGAGGCGTGCCAGGGCGACGGCGTGCTCAAGGTCGAGATGCACTTTCTGCCCGACGTGTACGTGCCCT
GCGACGTGTGCCACGGCAAGCGCTACAACCGCGAAACGCTGGAGGTGCTGTACAAGGGCAAGAACATCACCGAAGTGCTC
GAGATGACGGTCGAGCAGGCGCACGAGTTCTTCGCGCCGGTGCCGGTGGTGCGCCGCAAGCTGCAGACGCTGCTGGACGT
GGGCCTGGGCTACATCCGCCTGGGCCAGTCGGCGACCACGCTGTCGGGCGGCGAGGCGCAGCGCGTGAAGCTGTCGCTGG
AGCTGTCCAAGCGCGACACCGGCCGCACGCTCTACATCCTCGACGAGCCGACCACCGGCCTGCACTTCCACGACATCGAG
CTGCTGCTCAAGGTGATCCACAAGCTGCGCGACCAGGGCAACACGGTCGTCATCATCGAGCACAACCTCGACGTGATCAA
AACGGCGGACTGGCTGCTCGACCTCGGCCCCGAAGGCGGCGCCGGCGGCGGGCAGATCATCGCCAAGGGCACGCCGGAGG
AGGTGGCCAAGAGCCGCGCGAGCTTTACCGGCAAGTATCTGGCGCCGTTGCTCAAGCGCAAATGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-245)

UvrA DNA-binding domain (UvrA_DNA-bind)

(298-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae TIGR4

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae D39

56.917

99.266

0.565