Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LYZ37_RS10050 Genome accession   NZ_CP117029
Coordinates   2215641..2215934 (-) Length   97 a.a.
NCBI ID   WP_272785397.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2210641..2220934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS10025 (LYZ37_10025) lapB 2210925..2212094 (-) 1170 WP_171321077.1 lipopolysaccharide assembly protein LapB -
  LYZ37_RS10030 (LYZ37_10030) - 2212121..2212399 (-) 279 WP_004743675.1 LapA family protein -
  LYZ37_RS10035 (LYZ37_10035) ihfB 2212541..2212822 (-) 282 WP_004748547.1 integration host factor subunit beta -
  LYZ37_RS10040 (LYZ37_10040) rpsA 2213034..2214704 (-) 1671 WP_004748546.1 30S ribosomal protein S1 -
  LYZ37_RS10045 (LYZ37_10045) cmk 2214808..2215488 (-) 681 WP_004748545.1 (d)CMP kinase -
  LYZ37_RS10050 (LYZ37_10050) comEA 2215641..2215934 (-) 294 WP_272785397.1 ComEA family DNA-binding protein Machinery gene
  LYZ37_RS10055 (LYZ37_10055) ppiD 2216070..2217929 (-) 1860 WP_272785398.1 peptidylprolyl isomerase -
  LYZ37_RS10060 (LYZ37_10060) - 2218105..2218377 (-) 273 WP_004414742.1 HU family DNA-binding protein -
  LYZ37_RS10065 (LYZ37_10065) lon 2218571..2220922 (-) 2352 WP_239825372.1 endopeptidase La -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10386.10 Da        Isoelectric Point: 9.7550

>NTDB_id=782113 LYZ37_RS10050 WP_272785397.1 2215641..2215934(-) (comEA) [Vibrio tubiashii strain FP17]
MLKQILLIASLICVAPFSFANDVKSDPKYDGIEITVNINTASAQELADLLNGIGIKKAQAIVQHRKQHGKFASAESLTEV
KGIGAAIVAKNQSRIQL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=782113 LYZ37_RS10050 WP_272785397.1 2215641..2215934(-) (comEA) [Vibrio tubiashii strain FP17]
ATGCTAAAACAGATTCTTCTCATCGCGTCACTAATATGTGTTGCGCCTTTCTCTTTTGCCAACGATGTTAAATCTGATCC
CAAATATGACGGCATTGAAATTACCGTGAATATAAACACTGCGAGTGCGCAGGAGTTGGCAGATTTACTCAATGGAATTG
GCATCAAGAAAGCTCAAGCGATCGTGCAGCATCGAAAGCAACATGGTAAGTTTGCCAGCGCGGAGTCTTTAACCGAAGTG
AAAGGAATTGGCGCTGCAATTGTTGCCAAAAATCAATCTCGGATCCAACTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

58.333

98.969

0.577
  comEA Vibrio campbellii strain DS40M4

54.255

96.907

0.526
  comEA Vibrio cholerae C6706

63.235

70.103

0.443
  comEA Vibrio cholerae strain A1552

63.235

70.103

0.443
  comEA/comE1 Glaesserella parasuis strain SC1401

60

61.856

0.371
  comE1/comEA Haemophilus influenzae Rd KW20

58.333

61.856

0.361