Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   M0P24_RS08335 Genome accession   NZ_CP116957
Coordinates   1641133..1641795 (-) Length   220 a.a.
NCBI ID   WP_013851531.1    Uniprot ID   A0AAW6YBE2
Organism   Streptococcus pasteurianus strain WUSP070     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636133..1646795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS08325 (M0P24_08325) - 1639691..1640374 (-) 684 Protein_1649 transposase -
  M0P24_RS08330 (M0P24_08330) hpf 1640509..1641057 (-) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  M0P24_RS08335 (M0P24_08335) comFC/cflB 1641133..1641795 (-) 663 WP_013851531.1 ComF family protein Machinery gene
  M0P24_RS08340 (M0P24_08340) comFA/cflA 1641792..1643093 (-) 1302 WP_048791292.1 DEAD/DEAH box helicase Machinery gene
  M0P24_RS08345 (M0P24_08345) - 1643149..1643775 (+) 627 WP_048791291.1 YigZ family protein -
  M0P24_RS08350 (M0P24_08350) cysK 1643879..1644808 (+) 930 WP_117508847.1 cysteine synthase A -
  M0P24_RS08355 (M0P24_08355) - 1644921..1645277 (-) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  M0P24_RS08360 (M0P24_08360) - 1645277..1646677 (-) 1401 WP_003063536.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25590.68 Da        Isoelectric Point: 9.1814

>NTDB_id=781630 M0P24_RS08335 WP_013851531.1 1641133..1641795(-) (comFC/cflB) [Streptococcus pasteurianus strain WUSP070]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVHCPTCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKEIKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKIPYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYETGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=781630 M0P24_RS08335 WP_013851531.1 1641133..1641795(-) (comFC/cflB) [Streptococcus pasteurianus strain WUSP070]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAAAAAGATGACAA
TGGCGTGTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCCAACCTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCGTGGGAAAAACAACATCATCACGTATCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATTCTTTTAAGTCACGTTTTTTCAAAAGAAATCAAACA
AGCATTAAAAAAATATAAAAACTACACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCACTTTTACAAGCAGCTAAAATCCCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATCGATGATATTTACACAACTGGCGCCACTTTAAAGGGAATATATCAACTTTTCTATGAAACTGGAGCCAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae TIGR4

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae Rx1

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae D39

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae R6

50.455

100

0.505
  comFC/cflB Streptococcus mitis SK321

49.545

100

0.495
  comFC Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.364