Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   M0P24_RS08340 Genome accession   NZ_CP116957
Coordinates   1641792..1643093 (-) Length   433 a.a.
NCBI ID   WP_048791292.1    Uniprot ID   A0AAW6YPU0
Organism   Streptococcus pasteurianus strain WUSP070     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636792..1648093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS08325 (M0P24_08325) - 1639691..1640374 (-) 684 Protein_1649 transposase -
  M0P24_RS08330 (M0P24_08330) hpf 1640509..1641057 (-) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  M0P24_RS08335 (M0P24_08335) comFC/cflB 1641133..1641795 (-) 663 WP_013851531.1 ComF family protein Machinery gene
  M0P24_RS08340 (M0P24_08340) comFA/cflA 1641792..1643093 (-) 1302 WP_048791292.1 DEAD/DEAH box helicase Machinery gene
  M0P24_RS08345 (M0P24_08345) - 1643149..1643775 (+) 627 WP_048791291.1 YigZ family protein -
  M0P24_RS08350 (M0P24_08350) cysK 1643879..1644808 (+) 930 WP_117508847.1 cysteine synthase A -
  M0P24_RS08355 (M0P24_08355) - 1644921..1645277 (-) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  M0P24_RS08360 (M0P24_08360) - 1645277..1646677 (-) 1401 WP_003063536.1 Cof-type HAD-IIB family hydrolase -
  M0P24_RS08365 (M0P24_08365) - 1646796..1647440 (-) 645 WP_013851527.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49401.55 Da        Isoelectric Point: 10.1063

>NTDB_id=781631 M0P24_RS08340 WP_048791292.1 1641792..1643093(-) (comFA/cflA) [Streptococcus pasteurianus strain WUSP070]
MDKLNNYYGRLFTQAQLSDALKKQAKQLPAMTKLNHHYICNRCGSQVSLQNKLQTNVFYCRNCLVFGRNTSNGHLYYFPQ
RRFSKKDSLIWKGKLTPYQDDVSKGMLEGIDAKKDLLIHAVTGAGKTEMIYQSVSKIIDDGGCVCLASPRIDVCLELYKR
LSRDFSCPITLLHGDSEPYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNAVLYHAVDRAIKPNRTKIFLTATST
DELDKKVKTGTLTKLHLARRFHANPLVVPQKIWLSGVLSNMQKKKIPQKLINLIKKQRQTRYPLLIFFPNIEQGEAFTQI
LQTYFSEEQIAFVSSKTENRLDIVEKFRRQELSILVTTTILERGVTFPCVDVFVLLSNHRLYTKSTLVQISGRVGRAAER
PTGELLFLHDGSTKEMRKAIAEIKAMNKKGGFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=781631 M0P24_RS08340 WP_048791292.1 1641792..1643093(-) (comFA/cflA) [Streptococcus pasteurianus strain WUSP070]
ATGGATAAACTGAATAATTATTATGGAAGACTATTTACACAAGCTCAACTTTCGGATGCCTTAAAAAAGCAGGCTAAACA
GTTGCCGGCAATGACAAAATTAAATCATCATTATATTTGTAATCGTTGTGGTAGTCAAGTGTCTTTACAAAATAAACTTC
AAACAAACGTTTTTTATTGTCGAAATTGCCTTGTTTTTGGAAGAAATACGAGTAATGGACATCTCTATTATTTTCCACAA
AGACGTTTTTCTAAAAAAGATTCTCTTATTTGGAAAGGAAAATTGACCCCTTACCAAGATGATGTTTCAAAAGGGATGTT
AGAAGGCATTGATGCTAAGAAAGACCTACTTATTCATGCTGTTACAGGTGCTGGAAAAACAGAAATGATTTACCAATCTG
TATCCAAAATAATTGATGACGGTGGTTGTGTTTGCCTAGCAAGTCCGCGAATTGATGTTTGTCTGGAGCTTTATAAACGC
TTGTCACGTGATTTTTCGTGTCCGATTACATTGCTTCATGGAGATTCTGAGCCCTACAAACGTGCCCCTTTAATCATTGC
CACAACACATCAACTTTTAAAATTTTACCAAGCTTTTGATTTGTTAATTATTGATGAAGTTGATGCCTTTCCATTTGTGG
ATAATGCCGTGCTTTACCATGCTGTTGATAGAGCTATCAAACCTAATAGAACCAAGATTTTTTTAACAGCGACATCAACA
GATGAATTAGATAAAAAAGTAAAAACAGGAACTCTGACTAAATTGCACCTTGCTCGACGATTTCACGCCAATCCATTAGT
TGTGCCACAAAAAATCTGGTTGTCTGGCGTTTTATCCAATATGCAAAAGAAGAAAATTCCCCAGAAATTAATAAATCTTA
TAAAAAAACAACGTCAAACCCGCTATCCTTTGCTAATTTTCTTCCCAAATATCGAACAAGGAGAAGCCTTTACTCAAATT
TTACAGACCTATTTTTCAGAAGAACAAATCGCTTTTGTGTCTAGTAAAACAGAAAATCGCTTAGACATTGTAGAAAAATT
TAGGAGACAAGAACTTTCTATTTTGGTGACAACAACCATTTTAGAACGTGGTGTTACTTTCCCTTGTGTAGATGTCTTTG
TATTGCTTTCCAATCATAGATTATACACCAAAAGCACGCTAGTTCAGATTTCAGGGCGAGTTGGGAGAGCAGCAGAGCGT
CCAACAGGAGAACTGTTATTCTTGCATGACGGTAGTACCAAAGAAATGAGGAAAGCTATTGCTGAAATTAAAGCGATGAA
TAAAAAAGGAGGATTTGCATGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(96-244)

Helicase conserved C-terminal domain (Helicase_C)

(287-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

59.485

98.614

0.587
  comFA/cflA Streptococcus pneumoniae Rx1

59.485

98.614

0.587
  comFA/cflA Streptococcus pneumoniae D39

59.485

98.614

0.587
  comFA/cflA Streptococcus pneumoniae R6

59.485

98.614

0.587
  comFA/cflA Streptococcus mitis NCTC 12261

59.251

98.614

0.584
  comFA/cflA Streptococcus mitis SK321

58.548

98.614

0.577
  comFA Lactococcus lactis subsp. cremoris KW2

50

94.226

0.471
  comFA Latilactobacillus sakei subsp. sakei 23K

37.819

99.538

0.376