Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   M0P24_RS05130 Genome accession   NZ_CP116957
Coordinates   1014798..1015640 (+) Length   280 a.a.
NCBI ID   WP_069788979.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1009798..1020640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS05100 (M0P24_05100) - 1011122..1011271 (+) 150 WP_014294551.1 hypothetical protein -
  M0P24_RS05105 (M0P24_05105) - 1011448..1011765 (+) 318 WP_069788974.1 hypothetical protein -
  M0P24_RS05110 (M0P24_05110) - 1011897..1012307 (-) 411 WP_069788975.1 DUF4231 domain-containing protein -
  M0P24_RS05115 (M0P24_05115) ylqF 1012552..1013406 (+) 855 WP_069788976.1 ribosome biogenesis GTPase YlqF -
  M0P24_RS05120 (M0P24_05120) - 1013393..1014172 (+) 780 WP_111718225.1 ribonuclease HII -
  M0P24_RS05125 (M0P24_05125) - 1014174..1014725 (+) 552 WP_069788978.1 sugar O-acetyltransferase -
  M0P24_RS05130 (M0P24_05130) dprA 1014798..1015640 (+) 843 WP_069788979.1 DNA-processing protein DprA Machinery gene
  M0P24_RS05135 (M0P24_05135) topA 1016005..1018146 (+) 2142 WP_048791149.1 type I DNA topoisomerase -
  M0P24_RS05140 (M0P24_05140) - 1018294..1018959 (+) 666 WP_013851822.1 SatD family protein -
  M0P24_RS05145 (M0P24_05145) - 1018959..1019666 (+) 708 Protein_1027 DUF3307 domain-containing protein -
  M0P24_RS05150 (M0P24_05150) - 1019731..1020165 (+) 435 WP_248497687.1 hypothetical protein -

Sequence


Protein


Download         Length: 280 a.a.        Molecular weight: 31012.09 Da        Isoelectric Point: 8.5553

>NTDB_id=781621 M0P24_RS05130 WP_069788979.1 1014798..1015640(+) (dprA) [Streptococcus pasteurianus strain WUSP070]
MNNFELFKLKKAGLTNLNILAILDYQEKQEKSLSLRNMAVVSKCKNPILFMEKYKALNTKELRKEFNCFPSISILDDEYP
LELKHCYNPPVLLFYQGNLELLNRPKMAVVGARTASATGTKSVQKIVKELGNHFVIVSGLARGIDTSAHLSALKNGGASI
AVIGCGLDVYYPKENKQLQEYMVKNHLVLSEYVAGEAPLKFHFPERNRIIAGLSQGVIVVEAKLRSGSLITCERALEEGR
DVFAIPGNILDGKSDGCHHLIKEGAKCVTSGLDILSEYQI

Nucleotide


Download         Length: 843 bp        

>NTDB_id=781621 M0P24_RS05130 WP_069788979.1 1014798..1015640(+) (dprA) [Streptococcus pasteurianus strain WUSP070]
ATGAATAATTTTGAATTGTTTAAATTAAAAAAAGCAGGATTAACAAATCTTAATATTTTAGCTATTTTGGATTATCAAGA
AAAGCAAGAGAAATCACTATCTTTGCGTAATATGGCAGTCGTCTCAAAATGTAAAAATCCTATCCTTTTTATGGAAAAAT
ACAAAGCACTGAACACCAAAGAATTACGCAAAGAATTTAATTGTTTTCCTAGTATTTCCATACTAGATGACGAATACCCA
TTAGAACTCAAACATTGTTATAATCCACCTGTTTTGCTGTTTTATCAAGGAAATTTAGAATTACTCAATCGCCCAAAAAT
GGCAGTAGTAGGAGCAAGAACAGCATCAGCAACAGGGACAAAATCTGTACAGAAAATTGTCAAAGAACTCGGGAATCATT
TTGTTATCGTTAGTGGGTTGGCGCGTGGCATTGATACCAGTGCGCATTTATCAGCTCTAAAAAACGGTGGTGCATCGATT
GCCGTTATCGGTTGCGGACTGGACGTTTATTATCCCAAAGAAAATAAGCAGTTGCAGGAGTACATGGTTAAAAATCATCT
CGTATTAAGTGAGTACGTAGCAGGAGAAGCACCGCTGAAATTCCATTTTCCAGAGCGAAATCGTATTATTGCAGGTTTAT
CACAAGGCGTTATCGTAGTAGAAGCTAAGCTGCGCTCAGGCAGTTTGATTACGTGTGAAAGAGCATTGGAAGAAGGACGA
GACGTTTTTGCCATTCCAGGAAATATTTTAGATGGAAAATCTGATGGCTGTCATCATTTGATAAAAGAGGGCGCAAAATG
CGTCACATCAGGCTTAGATATCCTTTCGGAATATCAAATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

73.741

99.286

0.732

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.929

100

0.639

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.929

100

0.639

  dprA/cilB/dalA Streptococcus pneumoniae D39

63.929

100

0.639

  dprA/cilB/dalA Streptococcus pneumoniae R6

63.929

100

0.639

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.929

100

0.639

  dprA/cilB/dalA Streptococcus mitis SK321

63.929

100

0.639

  dprA Lactococcus lactis subsp. cremoris KW2

61.871

99.286

0.614

  dprA Haemophilus influenzae Rd KW20

38.258

94.286

0.361