Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   M0P24_RS04890 Genome accession   NZ_CP116957
Coordinates   968376..969050 (+) Length   224 a.a.
NCBI ID   WP_013851854.1    Uniprot ID   A0AAW6YDN2
Organism   Streptococcus pasteurianus strain WUSP070     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 963376..974050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS04875 (M0P24_04875) pstB 963974..964732 (+) 759 WP_003064887.1 phosphate ABC transporter ATP-binding protein PstB -
  M0P24_RS04880 (M0P24_04880) phoU 964764..965417 (+) 654 WP_069788960.1 phosphate signaling complex protein PhoU -
  M0P24_RS04885 (M0P24_04885) - 965640..968183 (+) 2544 WP_069788961.1 M1 family metallopeptidase -
  M0P24_RS04890 (M0P24_04890) ciaR 968376..969050 (+) 675 WP_013851854.1 response regulator transcription factor Regulator
  M0P24_RS04895 (M0P24_04895) ciaH 969040..970380 (+) 1341 WP_003064880.1 sensor histidine kinase Regulator
  M0P24_RS04900 (M0P24_04900) rpsT 970521..970772 (-) 252 WP_083245759.1 30S ribosomal protein S20 -
  M0P24_RS04905 (M0P24_04905) coaA 970847..971767 (-) 921 WP_069788963.1 type I pantothenate kinase -
  M0P24_RS04910 (M0P24_04910) - 971882..972475 (+) 594 WP_069788999.1 class I SAM-dependent methyltransferase -
  M0P24_RS04915 (M0P24_04915) deoC 972932..973594 (+) 663 WP_013851852.1 deoxyribose-phosphate aldolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25427.14 Da        Isoelectric Point: 4.3831

>NTDB_id=781619 M0P24_RS04890 WP_013851854.1 968376..969050(+) (ciaR) [Streptococcus pasteurianus strain WUSP070]
MIKILLVEDDLSLSNSIFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKDGFQVLKELREKSVSTPVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFSDNNLSYGELTVTTSTNTTTINGKEVEMLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFAKNLQTLRSVGYILKNAE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=781619 M0P24_RS04890 WP_013851854.1 968376..969050(+) (ciaR) [Streptococcus pasteurianus strain WUSP070]
ATGATTAAAATATTATTAGTAGAAGACGATTTGAGTTTATCTAATTCCATTTTTGATTTTTTAGACGATTTTGCTGATGT
AATGCAAGTGTTTGATGGCGAGGAAGGTTTGTATGAAGCAGAGAGTGGTGTATATGACCTTATTCTACTTGACCTAATGT
TACCTGAGAAAGATGGCTTCCAGGTTCTAAAAGAATTACGAGAAAAGTCTGTATCAACACCTGTACTTATTATGACTGCG
AAAGAAAGCCTCGACGATAAAGGACATGGATTTGAGTTGGGAGCTGATGATTATTTAACTAAACCCTTTTACCTTGAGGA
ATTAAAAATGCGTATCCAAGCTCTTTTGAAACGTTCTGGTAAGTTTAGTGATAATAATTTGTCTTATGGAGAGCTAACTG
TTACTACTTCTACTAATACAACAACTATTAATGGTAAAGAAGTGGAAATGCTTGGTAAAGAATTTGACTTGTTGGTTTAT
TTCTTACAAAATCAAAATGTTATTTTACCAAAATCACAAATTTTTGATCGTATTTGGGGCTTTGATAGTGATACAACGAT
TTCGGTTGTTGAGGTTTACGTTTCAAAAATTCGAAAAAAACTTAAAGGCACTACTTTTGCTAAAAACCTTCAGACCCTAC
GGAGTGTAGGTTATATTCTGAAAAATGCTGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

92.377

99.554

0.92
  ciaR Streptococcus pneumoniae Rx1

86.161

100

0.862
  ciaR Streptococcus pneumoniae D39

86.161

100

0.862
  ciaR Streptococcus pneumoniae R6

86.161

100

0.862
  ciaR Streptococcus pneumoniae TIGR4

86.161

100

0.862
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.667

100

0.388
  vicR Streptococcus mutans UA159

35.47

100

0.371
  micA Streptococcus pneumoniae Cp1015

35.622

100

0.371