Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PO771_RS00145 Genome accession   NZ_CP116902
Coordinates   28404..28889 (+) Length   161 a.a.
NCBI ID   WP_272561289.1    Uniprot ID   -
Organism   Aneurinibacillus uraniidurans strain B1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 23404..33889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO771_RS00105 (PO771_00105) - 23407..24141 (+) 735 WP_272561281.1 DUF554 domain-containing protein -
  PO771_RS00110 (PO771_00110) yyaC 24211..24849 (-) 639 WP_272561282.1 spore protease YyaC -
  PO771_RS00115 (PO771_00115) - 25066..25326 (+) 261 WP_272561283.1 DUF3343 domain-containing protein -
  PO771_RS00120 (PO771_00120) - 25347..26270 (+) 924 WP_272561284.1 mechanosensitive ion channel family protein -
  PO771_RS00125 (PO771_00125) - 26286..26489 (+) 204 WP_272561285.1 DUF951 domain-containing protein -
  PO771_RS00130 (PO771_00130) - 26539..26682 (-) 144 WP_272561286.1 hypothetical protein -
  PO771_RS00135 (PO771_00135) ychF 26788..27894 (+) 1107 WP_272561287.1 redox-regulated ATPase YchF -
  PO771_RS00140 (PO771_00140) rpsF 28084..28374 (+) 291 WP_272561288.1 30S ribosomal protein S6 -
  PO771_RS00145 (PO771_00145) ssbA 28404..28889 (+) 486 WP_272561289.1 single-stranded DNA-binding protein Machinery gene
  PO771_RS00150 (PO771_00150) rpsR 28929..29159 (+) 231 WP_272561290.1 30S ribosomal protein S18 -
  PO771_RS00155 (PO771_00155) - 29253..30248 (+) 996 WP_272561291.1 DUF2232 domain-containing protein -
  PO771_RS00160 (PO771_00160) - 30263..32224 (+) 1962 WP_272561292.1 DHH family phosphoesterase -
  PO771_RS00165 (PO771_00165) rplI 32221..32664 (+) 444 WP_272561294.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17728.54 Da        Isoelectric Point: 4.9909

>NTDB_id=781027 PO771_RS00145 WP_272561289.1 28404..28889(+) (ssbA) [Aneurinibacillus uraniidurans strain B1]
MLNRAILLGRLTKDPELRYTQNGTAVATFSLAIDRRTTNQQGERETDFLNIVVWSKLAELCAQYLKKGRQAAVEGRIQTR
NYENKEGRRVYVTEIVAENVQFIGGQGQGQGGSGFQDESYGGGFGQAPSSSGGSRSRDAFNDNPFADTQKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=781027 PO771_RS00145 WP_272561289.1 28404..28889(+) (ssbA) [Aneurinibacillus uraniidurans strain B1]
GTGTTGAATCGAGCGATATTGCTAGGTCGTTTAACGAAAGATCCGGAATTGCGCTACACGCAGAACGGAACAGCTGTAGC
TACGTTTTCGCTGGCTATAGATCGGAGAACGACTAACCAGCAGGGTGAAAGAGAAACCGATTTTCTCAACATCGTAGTCT
GGAGCAAGCTGGCTGAGCTTTGTGCTCAGTATTTGAAGAAAGGTCGTCAGGCAGCTGTCGAAGGCCGGATTCAGACACGC
AACTATGAGAACAAGGAAGGCCGACGCGTCTATGTTACAGAGATTGTGGCAGAGAACGTACAGTTTATCGGTGGACAAGG
TCAGGGCCAAGGTGGTTCAGGCTTCCAGGATGAGTCGTACGGTGGTGGATTCGGTCAGGCTCCTTCTTCTAGTGGCGGCA
GCCGTTCGCGCGATGCATTTAATGATAATCCCTTTGCTGATACTCAAAAACCGATTGATATCTCGGATGATGATTTACCA
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.107

100

0.584
  ssb Latilactobacillus sakei subsp. sakei 23K

46.471

100

0.491
  ssb Neisseria gonorrhoeae MS11

38.15

100

0.41
  ssb Neisseria meningitidis MC58

35.912

100

0.404
  ssb Vibrio cholerae strain A1552

33.52

100

0.373
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.366