Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PNF30_RS02765 Genome accession   NZ_CP116774
Coordinates   568064..568750 (+) Length   228 a.a.
NCBI ID   WP_263639812.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563064..573750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS02740 (PNF30_02740) degS 563217..564392 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  PNF30_RS02745 (PNF30_02745) degU 564457..565146 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  PNF30_RS02750 (PNF30_02750) - 565364..566206 (+) 843 WP_095409677.1 DegV family protein -
  PNF30_RS02755 (PNF30_02755) comFA 566327..567724 (+) 1398 WP_272510693.1 DEAD/DEAH box helicase Machinery gene
  PNF30_RS02760 (PNF30_02760) - 567774..568067 (+) 294 WP_041088040.1 late competence development ComFB family protein -
  PNF30_RS02765 (PNF30_02765) comFC 568064..568750 (+) 687 WP_263639812.1 ComF family protein Machinery gene
  PNF30_RS02770 (PNF30_02770) - 568807..569226 (+) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  PNF30_RS02775 (PNF30_02775) flgM 569306..569569 (+) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  PNF30_RS02780 (PNF30_02780) - 569588..570070 (+) 483 WP_144472023.1 flagellar protein FlgN -
  PNF30_RS02785 (PNF30_02785) flgK 570086..571606 (+) 1521 WP_144483665.1 flagellar hook-associated protein FlgK -
  PNF30_RS02790 (PNF30_02790) flgL 571616..572524 (+) 909 WP_144472025.1 flagellar hook-associated protein FlgL -
  PNF30_RS02795 (PNF30_02795) - 572571..573149 (+) 579 WP_095409672.1 DUF6470 family protein -
  PNF30_RS02800 (PNF30_02800) fliW 573178..573612 (+) 435 WP_075611996.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26087.65 Da        Isoelectric Point: 9.9366

>NTDB_id=780159 PNF30_RS02765 WP_263639812.1 568064..568750(+) (comFC) [Bacillus safensis strain SRCM125915]
MICPICDGHFVPAFTWKSLLLLNDERLCVACKNQLVKIERPICPTCGRAQSNDQMCQDCDRWNERIDSTKVLIKNRSVYI
YNELMKDVLARFKFRGDTALVELFKRDVQAAFKRSFCIKDPLLIPIPLSNERLKERGFNQSVIIASLIGKPILQPLVKIH
QSKQSKKKKNERLDQKGLFQIKQTNVIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 687 bp        

>NTDB_id=780159 PNF30_RS02765 WP_263639812.1 568064..568750(+) (comFC) [Bacillus safensis strain SRCM125915]
TTGATTTGCCCGATTTGCGATGGACATTTTGTGCCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGAGCGTCT
TTGTGTAGCATGTAAGAATCAATTAGTAAAGATTGAGCGTCCTATTTGTCCAACCTGCGGAAGAGCGCAGTCAAATGATC
AAATGTGCCAAGACTGTGATAGATGGAATGAACGCATTGATTCTACTAAAGTCCTTATAAAAAATAGGTCAGTTTATATC
TACAACGAGTTGATGAAAGATGTCCTTGCCCGCTTTAAATTTCGGGGTGATACGGCTTTAGTTGAGCTGTTTAAACGAGA
TGTACAAGCAGCATTTAAACGTTCCTTCTGCATAAAAGACCCATTGCTGATCCCGATCCCTTTAAGTAATGAAAGACTAA
AAGAAAGAGGGTTTAATCAGTCCGTTATCATCGCTTCCTTGATAGGTAAGCCGATATTGCAGCCACTCGTGAAAATACAT
CAAAGTAAGCAGTCCAAAAAAAAGAAAAATGAACGCCTAGATCAAAAAGGTTTGTTTCAAATAAAGCAAACAAATGTGAT
TGTTCAAAGAGATATTATATTAGTTGATGATATCTATACAACGGGAGCAACCATTTATGATGCGGCAAGAATTTTGAAAG
ACGCAGGTGCCAAAAGTGTTTCTTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(142-226)

Double zinc ribbon domain (DZR_2)

(3-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.491
  comFC/cflB Streptococcus mitis NCTC 12261

36.245

100

0.364
  comFC/cflB Streptococcus mitis SK321

36.245

100

0.364