Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PNF30_RS02745 Genome accession   NZ_CP116774
Coordinates   564457..565146 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain SRCM125915     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 559457..570146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS02725 (PNF30_02725) - 560150..561217 (+) 1068 WP_048237563.1 glycosyltransferase family 4 protein -
  PNF30_RS02730 (PNF30_02730) - 561253..562344 (-) 1092 WP_095409678.1 LCP family protein -
  PNF30_RS02735 (PNF30_02735) - 562329..562997 (-) 669 WP_272510692.1 YigZ family protein -
  PNF30_RS02740 (PNF30_02740) degS 563217..564392 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  PNF30_RS02745 (PNF30_02745) degU 564457..565146 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  PNF30_RS02750 (PNF30_02750) - 565364..566206 (+) 843 WP_095409677.1 DegV family protein -
  PNF30_RS02755 (PNF30_02755) comFA 566327..567724 (+) 1398 WP_272510693.1 DEAD/DEAH box helicase Machinery gene
  PNF30_RS02760 (PNF30_02760) - 567774..568067 (+) 294 WP_041088040.1 late competence development ComFB family protein -
  PNF30_RS02765 (PNF30_02765) comFC 568064..568750 (+) 687 WP_263639812.1 ComF family protein Machinery gene
  PNF30_RS02770 (PNF30_02770) - 568807..569226 (+) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  PNF30_RS02775 (PNF30_02775) flgM 569306..569569 (+) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  PNF30_RS02780 (PNF30_02780) - 569588..570070 (+) 483 WP_144472023.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=780157 PNF30_RS02745 WP_008348273.1 564457..565146(+) (degU) [Bacillus safensis strain SRCM125915]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=780157 PNF30_RS02745 WP_008348273.1 564457..565146(+) (degU) [Bacillus safensis strain SRCM125915]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTAAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCAGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTCCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996