Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   PND17_RS04120 Genome accession   NZ_CP116772
Coordinates   766362..766514 (-) Length   50 a.a.
NCBI ID   WP_271298027.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 761362..771514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS04095 (PND17_04095) - 761560..762033 (-) 474 Protein_802 ferrochelatase -
  PND17_RS04100 (PND17_04100) - 762059..763630 (-) 1572 WP_271297994.1 ATP-binding cassette domain-containing protein -
  PND17_RS04105 (PND17_04105) - 763632..764927 (-) 1296 WP_271297993.1 radical SAM/SPASM domain-containing protein -
  PND17_RS04110 (PND17_04110) - 765276..766139 (+) 864 WP_232978460.1 helix-turn-helix domain-containing protein -
  PND17_RS04115 (PND17_04115) - 766156..766374 (-) 219 WP_220016887.1 DUF5966 family protein -
  PND17_RS04120 (PND17_04120) prx 766362..766514 (-) 153 WP_271298027.1 Paratox Regulator
  PND17_RS04125 (PND17_04125) - 766670..766846 (-) 177 WP_155213607.1 hypothetical protein -
  PND17_RS04130 (PND17_04130) - 767122..767562 (-) 441 WP_271297992.1 ASCH domain-containing protein -
  PND17_RS04135 (PND17_04135) - 767566..768051 (-) 486 WP_271297991.1 NUDIX hydrolase -
  PND17_RS04140 (PND17_04140) - 768545..769381 (-) 837 Protein_811 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  PND17_RS04145 (PND17_04145) - 769381..769971 (-) 591 WP_011226355.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  PND17_RS04150 (PND17_04150) - 770132..770377 (-) 246 WP_271297990.1 hypothetical protein -
  PND17_RS04155 (PND17_04155) - 770439..770600 (-) 162 WP_271297989.1 hypothetical protein -
  PND17_RS04160 (PND17_04160) - 770612..771238 (-) 627 WP_271297988.1 hypothetical protein -
  PND17_RS04165 (PND17_04165) - 771263..771448 (-) 186 WP_271297987.1 hypothetical protein -

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 5694.54 Da        Isoelectric Point: 4.7513

>NTDB_id=780033 PND17_RS04120 WP_271298027.1 766362..766514(-) (prx) [Streptococcus thermophilus strain strain TSGB 4141]
MEKGFIKGDKISIVRRNGKIHDYVLPGEKVEPGEIVTEEDLKAVLEELRD

Nucleotide


Download         Length: 153 bp        

>NTDB_id=780033 PND17_RS04120 WP_271298027.1 766362..766514(-) (prx) [Streptococcus thermophilus strain strain TSGB 4141]
ATAGAAAAAGGGTTTATCAAGGGGGATAAAATCAGTATTGTCCGACGAAATGGGAAAATCCATGATTATGTTTTGCCAGG
AGAGAAAGTAGAACCTGGAGAAATAGTAACAGAGGAGGATTTAAAAGCTGTCCTTGAAGAATTGAGAGATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

54.167

96

0.52
  prx Streptococcus pyogenes MGAS8232

54.167

96

0.52
  prx Streptococcus pyogenes MGAS315

52.083

96

0.5
  prx Streptococcus pyogenes MGAS315

50

96

0.48
  prx Streptococcus pyogenes MGAS315

66.667

60

0.4
  prx Streptococcus pyogenes MGAS315

62.5

64

0.4