Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PND17_RS01660 Genome accession   NZ_CP116772
Coordinates   313905..314600 (-) Length   231 a.a.
NCBI ID   WP_271298047.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308905..319600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS01645 (PND17_01645) - 309716..310261 (-) 546 WP_087010097.1 GNAT family N-acetyltransferase -
  PND17_RS01650 (PND17_01650) - 310327..311589 (-) 1263 WP_022096991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PND17_RS01655 (PND17_01655) - 311675..313915 (-) 2241 WP_271298048.1 DNA internalization-related competence protein ComEC/Rec2 -
  PND17_RS01660 (PND17_01660) comEA 313905..314600 (-) 696 WP_271298047.1 helix-hairpin-helix domain-containing protein Machinery gene
  PND17_RS01665 (PND17_01665) - 314708..315463 (-) 756 WP_002948862.1 lysophospholipid acyltransferase family protein -
  PND17_RS10120 (PND17_01670) - 315663..316196 (+) 534 WP_271298046.1 polysaccharide deacetylase family protein -
  PND17_RS01675 (PND17_01675) - 316130..316528 (+) 399 WP_416370864.1 peptidoglycan GlcNAc deacetylase -
  PND17_RS01680 (PND17_01680) - 316578..317342 (+) 765 WP_065972495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PND17_RS01685 (PND17_01685) - 317346..317615 (+) 270 WP_011226404.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24500.43 Da        Isoelectric Point: 4.6236

>NTDB_id=780023 PND17_RS01660 WP_271298047.1 313905..314600(-) (comEA) [Streptococcus thermophilus strain strain TSGB 4141]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKVK
SKVTVDVKGAVVNPGVYTLKAGARVTDVIQEAGGMTEDADAKSVNLAASLSDEEVIYVANKDDNVSVLDQTGTGQVSDKG
GQAVSKDGKINLNTATSEQLQTISGIGAKRTEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=780023 PND17_RS01660 WP_271298047.1 313905..314600(-) (comEA) [Streptococcus thermophilus strain strain TSGB 4141]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTTTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CGTCTTCATCCAAACAAAGTTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACCGAAGGAAGTGAAAAAGTTAAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGTCAATCCAGGTGTCTATACGCTAAAGGCAGGCGCTAGGGTGACAGA
TGTCATTCAGGAAGCTGGAGGAATGACAGAAGATGCAGACGCTAAGAGTGTTAACTTAGCCGCAAGCTTGTCAGATGAAG
AGGTTATTTATGTAGCCAATAAAGATGATAATGTTTCTGTCCTTGATCAAACAGGTACTGGTCAGGTCTCTGACAAAGGA
GGGCAGGCTGTATCTAAGGATGGCAAAATTAACTTAAATACAGCAACCTCAGAGCAGTTGCAAACCATTTCTGGAATTGG
AGCTAAGCGGACAGAGGATATCATTGCCTATCGTGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(167-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

98.701

100

0.987
  comEA/celA/cilE Streptococcus mitis SK321

40.175

99.134

0.398
  comEA/celA/cilE Streptococcus pneumoniae D39

38.596

98.701

0.381
  comEA/celA/cilE Streptococcus pneumoniae R6

38.596

98.701

0.381
  comEA/celA/cilE Streptococcus pneumoniae Rx1

38.596

98.701

0.381
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.596

98.701

0.381
  comEA/celA/cilE Streptococcus mitis NCTC 12261

37.281

98.701

0.368