Detailed information NTG0779300

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: POF63_RS01140
• Genome accession: NZ_CP116708
• Coordinates: 191519..191932 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244259.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain CNCTC 10/84 sCas9
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 186519..196932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
POF63_RS01120 (POF63_01120)	-	188773..189138 (+)	366	WP_000285373.1	DUF1033 family protein	-
POF63_RS01125 (POF63_01125)	comYA	189310..190281 (+)	972	WP_000250801.1	competence type IV pilus ATPase ComGA	Machinery gene
POF63_RS01130 (POF63_01130)	comYB	190175..191218 (+)	1044	WP_228313184.1	competence type IV pilus assembly protein ComGB	Machinery gene
POF63_RS01135 (POF63_01135)	comGC/cglC	191215..191544 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
POF63_RS01140 (POF63_01140)	comYD	191519..191932 (+)	414	WP_000244259.1	competence type IV pilus minor pilin ComGD	Machinery gene
POF63_RS01145 (POF63_01145)	comGE	191904..192203 (+)	300	WP_038406052.1	competence type IV pilus minor pilin ComGE	-
POF63_RS01150 (POF63_01150)	comGF	192157..192618 (+)	462	WP_001874060.1	competence type IV pilus minor pilin ComGF	-
POF63_RS01155 (POF63_01155)	comGG	192596..192967 (+)	372	WP_000601105.1	competence type IV pilus minor pilin ComGG	-
POF63_RS01160 (POF63_01160)	comYH	193082..194056 (+)	975	WP_001008567.1	class I SAM-dependent methyltransferase	Machinery gene
POF63_RS01165 (POF63_01165)	-	194088..195281 (+)	1194	WP_000047534.1	acetate kinase	-
POF63_RS01170 (POF63_01170)	-	195409..195601 (+)	193	Protein_174	helix-turn-helix transcriptional regulator	-
POF63_RS01175 (POF63_01175)	-	195580..195846 (+)	267	Protein_175	hypothetical protein	-
POF63_RS01180 (POF63_01180)	-	195915..196580 (+)	666	WP_000008107.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15938.41 Da
• Isoelectric Point: 9.9787

>NTDB_id=779300 POF63_RS01140 WP_000244259.1 191519..191932(+) (comYD) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=779300 POF63_RS01140 WP_000244259.1 191519..191932(+) (comYD) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAACTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394