Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICHIAU1_RS11160 Genome accession   NZ_AP022345
Coordinates   2236596..2237051 (-) Length   151 a.a.
NCBI ID   WP_162049418.1    Uniprot ID   -
Organism   Fluviibacter phosphoraccumulans strain ICHIAU1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2231596..2242051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICHIAU1_RS11140 (ICHIAU1_21970) - 2232245..2233048 (-) 804 WP_162049422.1 ABC transporter ATP-binding protein -
  ICHIAU1_RS11145 (ICHIAU1_21980) - 2233242..2234069 (+) 828 WP_162049421.1 ferritin-like domain-containing protein -
  ICHIAU1_RS11150 (ICHIAU1_21990) rfaE2 2234084..2234575 (+) 492 WP_335808421.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -
  ICHIAU1_RS11155 (ICHIAU1_22000) - 2234639..2236489 (-) 1851 WP_242451528.1 potassium transporter Kup -
  ICHIAU1_RS11160 (ICHIAU1_22010) ssb 2236596..2237051 (-) 456 WP_162049418.1 single-stranded DNA-binding protein Machinery gene
  ICHIAU1_RS11165 (ICHIAU1_22020) - 2237114..2238343 (-) 1230 WP_242451526.1 MFS transporter -
  ICHIAU1_RS11170 (ICHIAU1_22030) uvrA 2238497..2241379 (+) 2883 WP_162049417.1 excinuclease ABC subunit UvrA -
  ICHIAU1_RS11175 (ICHIAU1_22040) - 2241389..2241706 (+) 318 WP_162049416.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16862.76 Da        Isoelectric Point: 5.9749

>NTDB_id=77838 ICHIAU1_RS11160 WP_162049418.1 2236596..2237051(-) (ssb) [Fluviibacter phosphoraccumulans strain ICHIAU1]
MASLNKVILIGNLGADPETRYTTSGDAVCNIRLATTDSWRDKASGEQREATEWHRVVFYRRLAEIAGQYLKKGSQVYIEG
RIKTRKWQDKDGQERYTTEVEATEMKMLGRREGQGEPVSRDDPFAPAAAGGSNASRRPPANVADLDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=77838 ICHIAU1_RS11160 WP_162049418.1 2236596..2237051(-) (ssb) [Fluviibacter phosphoraccumulans strain ICHIAU1]
ATGGCATCGCTTAATAAAGTTATTCTGATCGGCAACCTGGGTGCAGACCCGGAAACCCGTTACACCACTTCTGGCGATGC
GGTTTGTAATATCCGCCTGGCAACCACTGACAGCTGGCGCGACAAAGCCAGTGGCGAGCAGCGTGAAGCGACCGAGTGGC
ACCGCGTGGTGTTCTATCGTCGGTTGGCAGAGATTGCGGGTCAGTACCTGAAAAAAGGCTCACAGGTCTACATCGAAGGC
CGTATCAAGACCCGTAAATGGCAAGACAAGGATGGTCAGGAACGTTACACGACCGAAGTTGAAGCCACCGAAATGAAAAT
GTTGGGTCGCCGTGAAGGTCAGGGTGAGCCTGTCAGTCGTGATGATCCGTTTGCCCCGGCTGCCGCAGGCGGCAGCAATG
CAAGCCGTCGTCCGCCGGCCAATGTCGCCGATCTGGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Neisseria meningitidis MC58

50.282

100

0.589
  ssb Neisseria gonorrhoeae MS11

50

100

0.576
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

32.184

100

0.371

Multiple sequence alignment