Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SNM_RS09880 Genome accession   NZ_AP025613
Coordinates   1810181..1811365 (-) Length   394 a.a.
NCBI ID   WP_244344497.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM6-6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805181..1816365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNM_RS09855 (TthSNM66_19370) fabZ 1805406..1805834 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SNM_RS09860 (TthSNM66_19380) - 1805841..1806878 (-) 1038 WP_011173840.1 rod shape-determining protein -
  SNM_RS09865 (TthSNM66_19390) rny 1806890..1808614 (-) 1725 WP_244340910.1 ribonuclease Y -
  SNM_RS09870 (TthSNM66_19400) recA 1808615..1809637 (-) 1023 WP_011228937.1 recombinase RecA Machinery gene
  SNM_RS09875 (TthSNM66_19410) thpR 1809588..1810184 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  SNM_RS09880 (TthSNM66_19420) cinA 1810181..1811365 (-) 1185 WP_244344497.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SNM_RS09885 (TthSNM66_19430) - 1811338..1812114 (-) 777 WP_244346649.1 glycine cleavage system protein T -
  SNM_RS09890 (TthSNM66_19440) - 1812154..1813203 (+) 1050 WP_244346650.1 MFS transporter -
  SNM_RS09895 (TthSNM66_19450) - 1813196..1813822 (+) 627 WP_244346653.1 HAD family phosphatase -
  SNM_RS09900 (TthSNM66_19460) - 1813808..1814893 (-) 1086 WP_244346656.1 enolase C-terminal domain-like protein -
  SNM_RS09905 (TthSNM66_19470) - 1814911..1815624 (-) 714 WP_244344503.1 AAA family ATPase -
  SNM_RS09910 (TthSNM66_19480) - 1815657..1816154 (+) 498 WP_244344505.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42943.42 Da        Isoelectric Point: 8.2417

>NTDB_id=77776 SNM_RS09880 WP_244344497.1 1810181..1811365(-) (cinA) [Thermus thermophilus strain SNM6-6]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADGVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVREEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKRLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=77776 SNM_RS09880 WP_244344497.1 1810181..1811365(-) (cinA) [Thermus thermophilus strain SNM6-6]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGGGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGAAGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAGGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAGAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCCTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment